Strain Fitness in Pseudomonas simiae WCS417 around PS417_22740

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22735 and PS417_22740 are separated by 31 nucleotidesPS417_22740 and PS417_22745 are separated by 2 nucleotides PS417_22735: PS417_22735 - thiol oxidoreductase, at 4,925,205 to 4,926,632 _22735 PS417_22740: PS417_22740 - imelysin, at 4,926,664 to 4,927,728 _22740 PS417_22745: PS417_22745 - hypothetical protein, at 4,927,731 to 4,928,828 _22745 Position (kb) 4926 4927 4928Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4925.713 kb on - strand, within PS417_22735at 4925.713 kb on - strand, within PS417_22735at 4925.713 kb on - strand, within PS417_22735at 4925.885 kb on + strand, within PS417_22735at 4925.886 kb on - strand, within PS417_22735at 4925.886 kb on - strand, within PS417_22735at 4926.051 kb on - strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.261 kb on + strand, within PS417_22735at 4926.261 kb on + strand, within PS417_22735at 4926.628 kb on + strandat 4926.628 kb on + strandat 4926.629 kb on - strandat 4926.630 kb on + strandat 4926.630 kb on + strandat 4926.630 kb on + strandat 4926.631 kb on - strandat 4926.646 kb on + strandat 4926.784 kb on + strand, within PS417_22740at 4926.959 kb on + strand, within PS417_22740at 4926.959 kb on + strand, within PS417_22740at 4926.960 kb on - strand, within PS417_22740at 4926.960 kb on - strand, within PS417_22740at 4927.090 kb on + strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.296 kb on - strand, within PS417_22740at 4927.296 kb on - strand, within PS417_22740at 4927.540 kb on + strand, within PS417_22740at 4927.541 kb on - strand, within PS417_22740at 4927.630 kb on - strandat 4927.633 kb on + strandat 4927.633 kb on + strandat 4927.634 kb on - strandat 4927.766 kb on - strandat 4927.766 kb on - strandat 4927.998 kb on + strand, within PS417_22745at 4927.999 kb on - strandat 4928.065 kb on - strand, within PS417_22745at 4928.154 kb on + strand, within PS417_22745at 4928.154 kb on + strand, within PS417_22745at 4928.154 kb on + strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.155 kb on - strand, within PS417_22745at 4928.156 kb on + strandat 4928.157 kb on - strand, within PS417_22745at 4928.584 kb on + strand, within PS417_22745at 4928.627 kb on + strand, within PS417_22745

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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4,925,713 - PS417_22735 0.36 -1.4
4,925,713 - PS417_22735 0.36 -1.5
4,925,713 - PS417_22735 0.36 -0.5
4,925,885 + PS417_22735 0.48 -1.7
4,925,886 - PS417_22735 0.48 -1.4
4,925,886 - PS417_22735 0.48 -1.6
4,926,051 - PS417_22735 0.59 -1.2
4,926,186 + PS417_22735 0.69 -0.3
4,926,186 + PS417_22735 0.69 -1.3
4,926,186 + PS417_22735 0.69 -2.1
4,926,186 + PS417_22735 0.69 -1.5
4,926,261 + PS417_22735 0.74 -2.6
4,926,261 + PS417_22735 0.74 -2.4
4,926,628 + -1.1
4,926,628 + -1.0
4,926,629 - -1.0
4,926,630 + -0.4
4,926,630 + +1.3
4,926,630 + +1.1
4,926,631 - -0.4
4,926,646 + -0.7
4,926,784 + PS417_22740 0.11 -0.8
4,926,959 + PS417_22740 0.28 -0.9
4,926,959 + PS417_22740 0.28 +0.2
4,926,960 - PS417_22740 0.28 -0.6
4,926,960 - PS417_22740 0.28 -1.7
4,927,090 + PS417_22740 0.40 -1.2
4,927,091 - PS417_22740 0.40 -0.9
4,927,091 - PS417_22740 0.40 -0.4
4,927,091 - PS417_22740 0.40 -2.2
4,927,296 - PS417_22740 0.59 -1.2
4,927,296 - PS417_22740 0.59 -0.7
4,927,540 + PS417_22740 0.82 -2.0
4,927,541 - PS417_22740 0.82 -1.4
4,927,630 - -1.6
4,927,633 + -1.0
4,927,633 + +1.9
4,927,634 - -2.3
4,927,766 - -1.2
4,927,766 - +1.4
4,927,998 + PS417_22745 0.24 -1.3
4,927,999 - -1.1
4,928,065 - PS417_22745 0.30 -1.9
4,928,154 + PS417_22745 0.39 -0.3
4,928,154 + PS417_22745 0.39 -1.4
4,928,154 + PS417_22745 0.39 -2.8
4,928,155 - PS417_22745 0.39 -1.2
4,928,155 - PS417_22745 0.39 -0.5
4,928,155 - PS417_22745 0.39 -1.7
4,928,155 - PS417_22745 0.39 -1.0
4,928,155 - PS417_22745 0.39 -2.7
4,928,155 - PS417_22745 0.39 -1.2
4,928,156 + -0.7
4,928,157 - PS417_22745 0.39 +0.7
4,928,584 + PS417_22745 0.78 -1.4
4,928,627 + PS417_22745 0.82 -2.8

Or see this region's nucleotide sequence