Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20510 and PS417_20515 are separated by 203 nucleotides PS417_20515 and PS417_20520 are separated by 139 nucleotides PS417_20520 and PS417_20525 are separated by 49 nucleotides
PS417_20510: PS417_20510 - membrane protein, at 4,454,437 to 4,455,303
_20510
PS417_20515: PS417_20515 - FMN-dependent NADH-azoreductase, at 4,455,507 to 4,456,106
_20515
PS417_20520: PS417_20520 - 3-phosphoglycerate kinase, at 4,456,246 to 4,456,560
_20520
PS417_20525: PS417_20525 - LysR family transcriptional regulator, at 4,456,610 to 4,457,533
_20525
Position (kb)
4455
4456
4457 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4454.581 kb on + strand, within PS417_20510 at 4454.581 kb on + strand, within PS417_20510 at 4454.581 kb on + strand, within PS417_20510 at 4454.581 kb on + strand, within PS417_20510 at 4454.582 kb on - strand, within PS417_20510 at 4454.582 kb on - strand, within PS417_20510 at 4454.582 kb on - strand, within PS417_20510 at 4454.582 kb on - strand, within PS417_20510 at 4454.582 kb on - strand, within PS417_20510 at 4454.642 kb on + strand, within PS417_20510 at 4454.642 kb on + strand, within PS417_20510 at 4454.642 kb on + strand, within PS417_20510 at 4454.643 kb on - strand, within PS417_20510 at 4454.659 kb on - strand, within PS417_20510 at 4454.749 kb on + strand, within PS417_20510 at 4454.749 kb on + strand, within PS417_20510 at 4454.771 kb on + strand, within PS417_20510 at 4454.771 kb on + strand, within PS417_20510 at 4454.772 kb on - strand, within PS417_20510 at 4454.834 kb on + strand, within PS417_20510 at 4454.834 kb on + strand, within PS417_20510 at 4454.834 kb on + strand, within PS417_20510 at 4454.835 kb on - strand, within PS417_20510 at 4454.835 kb on - strand at 4454.835 kb on - strand, within PS417_20510 at 4455.077 kb on + strand, within PS417_20510 at 4455.078 kb on - strand, within PS417_20510 at 4455.089 kb on + strand, within PS417_20510 at 4455.089 kb on + strand, within PS417_20510 at 4455.089 kb on + strand, within PS417_20510 at 4455.089 kb on + strand, within PS417_20510 at 4455.090 kb on - strand, within PS417_20510 at 4455.090 kb on - strand, within PS417_20510 at 4455.090 kb on - strand, within PS417_20510 at 4455.218 kb on + strand at 4455.218 kb on + strand at 4455.219 kb on - strand at 4455.219 kb on - strand at 4455.243 kb on - strand at 4455.293 kb on - strand at 4455.293 kb on - strand at 4455.296 kb on + strand at 4455.296 kb on + strand at 4455.297 kb on - strand at 4455.297 kb on - strand at 4455.334 kb on - strand at 4455.448 kb on - strand at 4455.470 kb on + strand at 4455.470 kb on + strand at 4455.470 kb on + strand at 4455.470 kb on + strand at 4455.470 kb on + strand at 4455.471 kb on - strand at 4455.640 kb on + strand, within PS417_20515 at 4455.641 kb on - strand, within PS417_20515 at 4455.641 kb on - strand, within PS417_20515 at 4455.745 kb on + strand, within PS417_20515 at 4455.746 kb on - strand, within PS417_20515 at 4455.817 kb on + strand, within PS417_20515 at 4456.114 kb on + strand at 4456.114 kb on + strand at 4456.115 kb on - strand at 4456.115 kb on - strand at 4456.136 kb on + strand at 4456.156 kb on + strand at 4456.156 kb on + strand at 4456.409 kb on + strand, within PS417_20520 at 4456.461 kb on - strand, within PS417_20520 at 4456.461 kb on - strand, within PS417_20520 at 4456.591 kb on - strand at 4456.724 kb on + strand, within PS417_20525 at 4456.725 kb on - strand, within PS417_20525 at 4456.925 kb on + strand, within PS417_20525 at 4457.007 kb on + strand, within PS417_20525 at 4457.008 kb on - strand, within PS417_20525 at 4457.008 kb on - strand, within PS417_20525
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 4,454,581 + PS417_20510 0.17 +1.2 4,454,581 + PS417_20510 0.17 -0.5 4,454,581 + PS417_20510 0.17 -0.4 4,454,581 + PS417_20510 0.17 -0.2 4,454,582 - PS417_20510 0.17 -0.4 4,454,582 - PS417_20510 0.17 -0.2 4,454,582 - PS417_20510 0.17 -0.7 4,454,582 - PS417_20510 0.17 -0.7 4,454,582 - PS417_20510 0.17 -0.0 4,454,642 + PS417_20510 0.24 +0.3 4,454,642 + PS417_20510 0.24 -0.1 4,454,642 + PS417_20510 0.24 -0.1 4,454,643 - PS417_20510 0.24 +0.5 4,454,659 - PS417_20510 0.26 -2.3 4,454,749 + PS417_20510 0.36 +0.1 4,454,749 + PS417_20510 0.36 -0.1 4,454,771 + PS417_20510 0.39 +0.0 4,454,771 + PS417_20510 0.39 -0.1 4,454,772 - PS417_20510 0.39 -0.3 4,454,834 + PS417_20510 0.46 -0.3 4,454,834 + PS417_20510 0.46 -0.1 4,454,834 + PS417_20510 0.46 -1.6 4,454,835 - PS417_20510 0.46 +0.1 4,454,835 - -0.2 4,454,835 - PS417_20510 0.46 +0.4 4,455,077 + PS417_20510 0.74 -0.3 4,455,078 - PS417_20510 0.74 +0.4 4,455,089 + PS417_20510 0.75 +0.9 4,455,089 + PS417_20510 0.75 -0.1 4,455,089 + PS417_20510 0.75 -1.2 4,455,089 + PS417_20510 0.75 -0.8 4,455,090 - PS417_20510 0.75 +0.5 4,455,090 - PS417_20510 0.75 +0.1 4,455,090 - PS417_20510 0.75 -0.4 4,455,218 + -1.3 4,455,218 + +0.3 4,455,219 - -0.4 4,455,219 - -0.0 4,455,243 - -0.0 4,455,293 - +0.3 4,455,293 - -0.3 4,455,296 + -0.3 4,455,296 + +0.6 4,455,297 - -2.0 4,455,297 - -2.1 4,455,334 - +0.1 4,455,448 - +0.5 4,455,470 + +0.5 4,455,470 + -0.2 4,455,470 + -0.3 4,455,470 + +0.4 4,455,470 + -0.0 4,455,471 - +0.7 4,455,640 + PS417_20515 0.22 -0.4 4,455,641 - PS417_20515 0.22 -0.2 4,455,641 - PS417_20515 0.22 -0.3 4,455,745 + PS417_20515 0.40 +0.4 4,455,746 - PS417_20515 0.40 +0.1 4,455,817 + PS417_20515 0.52 +0.4 4,456,114 + +0.0 4,456,114 + -0.1 4,456,115 - -0.1 4,456,115 - -0.3 4,456,136 + +0.6 4,456,156 + +1.2 4,456,156 + -0.1 4,456,409 + PS417_20520 0.52 +5.8 4,456,461 - PS417_20520 0.68 -0.3 4,456,461 - PS417_20520 0.68 -0.0 4,456,591 - +0.5 4,456,724 + PS417_20525 0.12 -0.3 4,456,725 - PS417_20525 0.12 +0.2 4,456,925 + PS417_20525 0.34 +0.3 4,457,007 + PS417_20525 0.43 -0.3 4,457,008 - PS417_20525 0.43 -0.1 4,457,008 - PS417_20525 0.43 -0.4
Or see this region's nucleotide sequence