Strain Fitness in Pseudomonas simiae WCS417 around PS417_19920

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19915 and PS417_19920 are separated by 137 nucleotidesPS417_19920 and PS417_19925 are separated by 99 nucleotides PS417_19915: PS417_19915 - serine/threonine protein phosphatase, at 4,324,703 to 4,325,512 _19915 PS417_19920: PS417_19920 - AraC family transcriptional regulator, at 4,325,650 to 4,326,399 _19920 PS417_19925: PS417_19925 - membrane protein, at 4,326,499 to 4,327,383 _19925 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -1 0 1at 4324.765 kb on - strandat 4324.836 kb on + strand, within PS417_19915at 4324.837 kb on - strand, within PS417_19915at 4324.984 kb on - strand, within PS417_19915at 4325.001 kb on + strand, within PS417_19915at 4325.002 kb on - strand, within PS417_19915at 4325.007 kb on + strand, within PS417_19915at 4325.064 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.250 kb on + strand, within PS417_19915at 4325.251 kb on - strand, within PS417_19915at 4325.251 kb on - strand, within PS417_19915at 4325.322 kb on + strand, within PS417_19915at 4325.322 kb on + strand, within PS417_19915at 4325.322 kb on + strand, within PS417_19915at 4325.322 kb on + strandat 4325.323 kb on - strand, within PS417_19915at 4325.323 kb on - strand, within PS417_19915at 4325.560 kb on + strandat 4325.561 kb on - strandat 4325.565 kb on + strandat 4325.565 kb on + strandat 4325.619 kb on - strandat 4325.619 kb on - strandat 4325.670 kb on - strandat 4325.677 kb on + strandat 4325.677 kb on + strandat 4325.677 kb on + strandat 4325.678 kb on - strandat 4326.038 kb on + strand, within PS417_19920at 4326.232 kb on + strand, within PS417_19920at 4326.232 kb on + strand, within PS417_19920at 4326.232 kb on + strand, within PS417_19920at 4326.233 kb on - strand, within PS417_19920at 4326.233 kb on - strand, within PS417_19920at 4326.233 kb on - strand, within PS417_19920at 4326.233 kb on - strand, within PS417_19920at 4326.234 kb on + strand, within PS417_19920at 4326.319 kb on + strand, within PS417_19920at 4326.321 kb on + strand, within PS417_19920at 4326.321 kb on + strand, within PS417_19920at 4326.322 kb on - strand, within PS417_19920at 4326.322 kb on - strand, within PS417_19920at 4326.322 kb on - strand, within PS417_19920at 4326.446 kb on - strandat 4326.484 kb on + strandat 4326.485 kb on - strandat 4326.532 kb on - strandat 4326.704 kb on + strand, within PS417_19925at 4327.386 kb on + strandat 4327.389 kb on - strandat 4327.393 kb on + strandat 4327.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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4,324,765 - +1.0
4,324,836 + PS417_19915 0.16 -1.1
4,324,837 - PS417_19915 0.17 -0.5
4,324,984 - PS417_19915 0.35 +0.2
4,325,001 + PS417_19915 0.37 +0.4
4,325,002 - PS417_19915 0.37 -1.0
4,325,007 + PS417_19915 0.38 +0.4
4,325,064 + PS417_19915 0.45 -0.3
4,325,250 + PS417_19915 0.68 +0.6
4,325,250 + PS417_19915 0.68 +0.0
4,325,250 + PS417_19915 0.68 +0.2
4,325,250 + PS417_19915 0.68 +0.8
4,325,250 + PS417_19915 0.68 -0.0
4,325,250 + PS417_19915 0.68 +0.0
4,325,251 - PS417_19915 0.68 +0.1
4,325,251 - PS417_19915 0.68 -0.1
4,325,322 + PS417_19915 0.76 -0.2
4,325,322 + PS417_19915 0.76 -0.7
4,325,322 + PS417_19915 0.76 -0.1
4,325,322 + -1.0
4,325,323 - PS417_19915 0.77 -1.3
4,325,323 - PS417_19915 0.77 +0.3
4,325,560 + +0.3
4,325,561 - -0.2
4,325,565 + +0.1
4,325,565 + -1.0
4,325,619 - +0.2
4,325,619 - -0.3
4,325,670 - +0.7
4,325,677 + +0.1
4,325,677 + +0.5
4,325,677 + +0.6
4,325,678 - +0.0
4,326,038 + PS417_19920 0.52 +0.4
4,326,232 + PS417_19920 0.78 -0.0
4,326,232 + PS417_19920 0.78 -0.3
4,326,232 + PS417_19920 0.78 +0.1
4,326,233 - PS417_19920 0.78 -0.1
4,326,233 - PS417_19920 0.78 +0.3
4,326,233 - PS417_19920 0.78 -1.7
4,326,233 - PS417_19920 0.78 +0.4
4,326,234 + PS417_19920 0.78 -0.2
4,326,319 + PS417_19920 0.89 -0.4
4,326,321 + PS417_19920 0.89 -1.1
4,326,321 + PS417_19920 0.89 -0.0
4,326,322 - PS417_19920 0.90 -0.1
4,326,322 - PS417_19920 0.90 -0.2
4,326,322 - PS417_19920 0.90 -0.3
4,326,446 - +0.5
4,326,484 + -0.3
4,326,485 - +0.2
4,326,532 - -0.3
4,326,704 + PS417_19925 0.23 -0.2
4,327,386 + -0.4
4,327,389 - -0.0
4,327,393 + -0.2
4,327,393 + +0.0

Or see this region's nucleotide sequence