Strain Fitness in Pseudomonas simiae WCS417 around PS417_15895

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15885 and PS417_15890 are separated by 234 nucleotidesPS417_15890 and PS417_15895 overlap by 4 nucleotidesPS417_15895 and PS417_15900 are separated by 98 nucleotides PS417_15885: PS417_15885 - GCN5 family acetyltransferase, at 3,478,628 to 3,479,053 _15885 PS417_15890: PS417_15890 - RNA polymerase sigma factor, at 3,479,288 to 3,479,818 _15890 PS417_15895: PS417_15895 - iron dicitrate transport regulator FecR, at 3,479,815 to 3,480,765 _15895 PS417_15900: PS417_15900 - TonB-dependent receptor, at 3,480,864 to 3,483,326 _15900 Position (kb) 3479 3480 3481Strain fitness (log2 ratio) -3 -2 -1 0 1at 3478.937 kb on + strand, within PS417_15885at 3478.967 kb on + strand, within PS417_15885at 3479.042 kb on - strandat 3479.116 kb on + strandat 3479.685 kb on + strand, within PS417_15890at 3479.686 kb on - strand, within PS417_15890at 3479.751 kb on - strandat 3479.751 kb on - strand, within PS417_15890at 3479.868 kb on + strandat 3479.869 kb on + strandat 3479.869 kb on + strandat 3479.870 kb on - strandat 3479.870 kb on - strandat 3479.962 kb on + strand, within PS417_15895at 3479.963 kb on - strand, within PS417_15895at 3480.110 kb on - strand, within PS417_15895at 3480.151 kb on + strand, within PS417_15895at 3480.285 kb on - strand, within PS417_15895at 3481.108 kb on - strandat 3481.108 kb on - strandat 3481.182 kb on + strand, within PS417_15900at 3481.522 kb on - strandat 3481.522 kb on - strand, within PS417_15900at 3481.531 kb on + strand, within PS417_15900at 3481.531 kb on + strand, within PS417_15900at 3481.532 kb on - strand, within PS417_15900at 3481.534 kb on - strand, within PS417_15900

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,478,937 + PS417_15885 0.73 +0.1
3,478,967 + PS417_15885 0.80 +0.7
3,479,042 - +0.5
3,479,116 + -0.3
3,479,685 + PS417_15890 0.75 -0.0
3,479,686 - PS417_15890 0.75 -0.0
3,479,751 - +0.7
3,479,751 - PS417_15890 0.87 -0.4
3,479,868 + -2.9
3,479,869 + -0.6
3,479,869 + +0.5
3,479,870 - +0.1
3,479,870 - -0.0
3,479,962 + PS417_15895 0.15 +0.2
3,479,963 - PS417_15895 0.16 +1.1
3,480,110 - PS417_15895 0.31 +0.2
3,480,151 + PS417_15895 0.35 +1.4
3,480,285 - PS417_15895 0.49 -0.3
3,481,108 - -0.1
3,481,108 - -0.4
3,481,182 + PS417_15900 0.13 -0.4
3,481,522 - +0.7
3,481,522 - PS417_15900 0.27 +0.1
3,481,531 + PS417_15900 0.27 -0.0
3,481,531 + PS417_15900 0.27 +0.6
3,481,532 - PS417_15900 0.27 -1.3
3,481,534 - PS417_15900 0.27 +0.1

Or see this region's nucleotide sequence