Strain Fitness in Pseudomonas simiae WCS417 around PS417_15805

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15795 and PS417_15800 are separated by 164 nucleotidesPS417_15800 and PS417_15805 overlap by 1 nucleotidesPS417_15805 and PS417_15810 are separated by 71 nucleotidesPS417_15810 and PS417_15815 are separated by 125 nucleotides PS417_15795: PS417_15795 - hypothetical protein, at 3,462,293 to 3,462,676 _15795 PS417_15800: PS417_15800 - photosynthetic protein synthase I, at 3,462,841 to 3,463,449 _15800 PS417_15805: PS417_15805 - transporter, at 3,463,449 to 3,463,916 _15805 PS417_15810: PS417_15810 - hypothetical protein, at 3,463,988 to 3,464,317 _15810 PS417_15815: PS417_15815 - hydrolase, at 3,464,443 to 3,464,952 _15815 Position (kb) 3463 3464Strain fitness (log2 ratio) -2 -1 0 1at 3462.466 kb on - strand, within PS417_15795at 3462.630 kb on + strand, within PS417_15795at 3462.689 kb on - strandat 3462.749 kb on - strandat 3462.749 kb on - strandat 3462.771 kb on - strandat 3462.846 kb on + strandat 3462.846 kb on + strandat 3462.947 kb on - strand, within PS417_15800at 3462.947 kb on - strand, within PS417_15800at 3462.982 kb on - strand, within PS417_15800at 3463.030 kb on + strand, within PS417_15800at 3463.207 kb on + strand, within PS417_15800at 3463.207 kb on + strand, within PS417_15800at 3463.208 kb on - strand, within PS417_15800at 3463.321 kb on + strand, within PS417_15800at 3463.322 kb on - strand, within PS417_15800at 3463.322 kb on - strand, within PS417_15800at 3463.322 kb on - strand, within PS417_15800at 3463.322 kb on - strand, within PS417_15800at 3463.476 kb on - strandat 3463.482 kb on - strandat 3463.758 kb on + strand, within PS417_15805at 3463.979 kb on + strandat 3463.981 kb on + strandat 3464.141 kb on - strand, within PS417_15810at 3464.173 kb on - strand, within PS417_15810at 3464.184 kb on + strand, within PS417_15810at 3464.217 kb on + strand, within PS417_15810at 3464.217 kb on + strandat 3464.218 kb on - strand, within PS417_15810at 3464.231 kb on + strandat 3464.257 kb on - strand, within PS417_15810at 3464.656 kb on + strand, within PS417_15815at 3464.656 kb on + strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.658 kb on + strand, within PS417_15815at 3464.659 kb on - strand, within PS417_15815

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,462,466 - PS417_15795 0.45 -1.3
3,462,630 + PS417_15795 0.88 -0.6
3,462,689 - -0.3
3,462,749 - +0.3
3,462,749 - -1.9
3,462,771 - -1.5
3,462,846 + -2.1
3,462,846 + -1.2
3,462,947 - PS417_15800 0.17 -2.5
3,462,947 - PS417_15800 0.17 -0.9
3,462,982 - PS417_15800 0.23 -2.5
3,463,030 + PS417_15800 0.31 -0.5
3,463,207 + PS417_15800 0.60 -1.5
3,463,207 + PS417_15800 0.60 -2.3
3,463,208 - PS417_15800 0.60 -2.0
3,463,321 + PS417_15800 0.79 -1.4
3,463,322 - PS417_15800 0.79 -2.6
3,463,322 - PS417_15800 0.79 -0.6
3,463,322 - PS417_15800 0.79 -1.9
3,463,322 - PS417_15800 0.79 +1.2
3,463,476 - -1.6
3,463,482 - -0.9
3,463,758 + PS417_15805 0.66 -1.1
3,463,979 + +0.6
3,463,981 + -0.2
3,464,141 - PS417_15810 0.46 -0.1
3,464,173 - PS417_15810 0.56 -0.1
3,464,184 + PS417_15810 0.59 -0.7
3,464,217 + PS417_15810 0.69 -0.4
3,464,217 + +0.7
3,464,218 - PS417_15810 0.70 +0.0
3,464,231 + -0.7
3,464,257 - PS417_15810 0.82 +0.1
3,464,656 + PS417_15815 0.42 -2.4
3,464,656 + PS417_15815 0.42 -0.1
3,464,657 - PS417_15815 0.42 -0.4
3,464,657 - PS417_15815 0.42 -0.1
3,464,657 - PS417_15815 0.42 -0.1
3,464,658 + PS417_15815 0.42 -0.5
3,464,659 - PS417_15815 0.42 +0.3

Or see this region's nucleotide sequence