Strain Fitness in Pseudomonas simiae WCS417 around PS417_15540

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15535 and PS417_15540 are separated by 127 nucleotidesPS417_15540 and PS417_15545 are separated by 44 nucleotides PS417_15535: PS417_15535 - oxidoreductase, at 3,400,289 to 3,401,269 _15535 PS417_15540: PS417_15540 - NUDIX hydrolase, at 3,401,397 to 3,401,759 _15540 PS417_15545: PS417_15545 - glucosidase, at 3,401,804 to 3,404,440 _15545 Position (kb) 3401 3402Strain fitness (log2 ratio) -2 -1 0 1at 3400.692 kb on + strand, within PS417_15535at 3400.692 kb on + strand, within PS417_15535at 3400.734 kb on + strand, within PS417_15535at 3401.026 kb on - strand, within PS417_15535at 3401.059 kb on - strandat 3401.107 kb on - strand, within PS417_15535at 3401.199 kb on + strandat 3401.339 kb on + strandat 3401.404 kb on + strandat 3401.662 kb on + strand, within PS417_15540at 3401.686 kb on - strand, within PS417_15540at 3401.757 kb on + strandat 3401.758 kb on - strandat 3401.758 kb on - strandat 3401.758 kb on - strandat 3401.823 kb on - strandat 3402.130 kb on - strand, within PS417_15545at 3402.130 kb on - strand, within PS417_15545at 3402.207 kb on + strand, within PS417_15545at 3402.654 kb on + strand, within PS417_15545at 3402.654 kb on + strand, within PS417_15545at 3402.693 kb on + strand, within PS417_15545at 3402.694 kb on - strand, within PS417_15545at 3402.694 kb on - strand, within PS417_15545at 3402.694 kb on - strand, within PS417_15545

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,400,692 + PS417_15535 0.41 -0.0
3,400,692 + PS417_15535 0.41 -0.7
3,400,734 + PS417_15535 0.45 +0.1
3,401,026 - PS417_15535 0.75 +0.5
3,401,059 - +0.5
3,401,107 - PS417_15535 0.83 +0.5
3,401,199 + +0.3
3,401,339 + -0.6
3,401,404 + -0.6
3,401,662 + PS417_15540 0.73 -1.3
3,401,686 - PS417_15540 0.80 -1.4
3,401,757 + -0.3
3,401,758 - -0.9
3,401,758 - -2.0
3,401,758 - -0.1
3,401,823 - -0.2
3,402,130 - PS417_15545 0.12 -2.2
3,402,130 - PS417_15545 0.12 -0.1
3,402,207 + PS417_15545 0.15 -0.4
3,402,654 + PS417_15545 0.32 -1.3
3,402,654 + PS417_15545 0.32 -0.5
3,402,693 + PS417_15545 0.34 +0.2
3,402,694 - PS417_15545 0.34 +0.1
3,402,694 - PS417_15545 0.34 -0.5
3,402,694 - PS417_15545 0.34 -0.1

Or see this region's nucleotide sequence