Strain Fitness in Pseudomonas simiae WCS417 around PS417_15090

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15085 and PS417_15090 are separated by 5 nucleotidesPS417_15090 and PS417_15095 overlap by 4 nucleotidesPS417_15095 and PS417_15100 overlap by 8 nucleotides PS417_15085: PS417_15085 - ATPase AAA, at 3,299,291 to 3,300,250 _15085 PS417_15090: PS417_15090 - hypothetical protein, at 3,300,256 to 3,301,188 _15090 PS417_15095: PS417_15095 - hypothetical protein, at 3,301,185 to 3,301,679 _15095 PS417_15100: PS417_15100 - BatB protein, at 3,301,672 to 3,302,760 _15100 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -1 0 1 2 3at 3299.335 kb on + strandat 3299.335 kb on + strandat 3299.336 kb on - strandat 3299.402 kb on - strand, within PS417_15085at 3299.537 kb on + strand, within PS417_15085at 3299.690 kb on + strand, within PS417_15085at 3299.691 kb on - strand, within PS417_15085at 3299.753 kb on + strand, within PS417_15085at 3299.833 kb on + strand, within PS417_15085at 3299.939 kb on + strand, within PS417_15085at 3299.940 kb on - strand, within PS417_15085at 3299.940 kb on - strand, within PS417_15085at 3299.963 kb on + strand, within PS417_15085at 3299.963 kb on + strand, within PS417_15085at 3300.425 kb on - strand, within PS417_15090at 3301.039 kb on + strand, within PS417_15090at 3301.039 kb on + strand, within PS417_15090at 3301.492 kb on - strand, within PS417_15095at 3301.580 kb on - strand, within PS417_15095at 3301.586 kb on - strand, within PS417_15095at 3301.780 kb on + strandat 3302.108 kb on - strand, within PS417_15100

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,299,335 + -0.4
3,299,335 + +0.4
3,299,336 - +1.9
3,299,402 - PS417_15085 0.12 +1.1
3,299,537 + PS417_15085 0.26 +0.3
3,299,690 + PS417_15085 0.42 +1.7
3,299,691 - PS417_15085 0.42 -0.1
3,299,753 + PS417_15085 0.48 -0.7
3,299,833 + PS417_15085 0.56 -0.2
3,299,939 + PS417_15085 0.68 +1.4
3,299,940 - PS417_15085 0.68 +3.7
3,299,940 - PS417_15085 0.68 -0.6
3,299,963 + PS417_15085 0.70 +0.9
3,299,963 + PS417_15085 0.70 +1.0
3,300,425 - PS417_15090 0.18 -1.4
3,301,039 + PS417_15090 0.84 -0.2
3,301,039 + PS417_15090 0.84 -1.1
3,301,492 - PS417_15095 0.62 -1.0
3,301,580 - PS417_15095 0.80 -1.2
3,301,586 - PS417_15095 0.81 -1.3
3,301,780 + -0.9
3,302,108 - PS417_15100 0.40 -0.1

Or see this region's nucleotide sequence