Strain Fitness in Pseudomonas simiae WCS417 around PS417_12695

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12690 and PS417_12695 are separated by 141 nucleotidesPS417_12695 and PS417_12700 are separated by 18 nucleotides PS417_12690: PS417_12690 - xylulose kinase, at 2,760,474 to 2,761,955 _12690 PS417_12695: PS417_12695 - mannitol dehydrogenase, at 2,762,097 to 2,763,578 _12695 PS417_12700: PS417_12700 - ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data), at 2,763,597 to 2,764,700 _12700 Position (kb) 2762 2763 2764Strain fitness (log2 ratio) -2 -1 0 1at 2761.132 kb on + strand, within PS417_12690at 2761.133 kb on - strand, within PS417_12690at 2761.451 kb on - strand, within PS417_12690at 2761.460 kb on - strand, within PS417_12690at 2761.869 kb on + strandat 2761.870 kb on - strandat 2762.062 kb on - strandat 2762.095 kb on - strandat 2762.095 kb on - strandat 2762.098 kb on + strandat 2762.099 kb on - strandat 2762.099 kb on - strandat 2762.116 kb on - strandat 2762.116 kb on - strandat 2762.116 kb on - strandat 2762.308 kb on + strandat 2762.309 kb on - strandat 2762.341 kb on + strand, within PS417_12695at 2762.578 kb on + strand, within PS417_12695at 2762.590 kb on + strand, within PS417_12695at 2763.026 kb on + strand, within PS417_12695at 2763.172 kb on + strand, within PS417_12695at 2763.323 kb on - strand, within PS417_12695at 2763.448 kb on + strandat 2763.449 kb on - strandat 2763.449 kb on - strandat 2763.507 kb on - strandat 2763.520 kb on + strandat 2764.037 kb on - strand, within PS417_12700at 2764.037 kb on - strand, within PS417_12700at 2764.136 kb on - strandat 2764.441 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.451 kb on - strand, within PS417_12700

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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2,761,132 + PS417_12690 0.44 +0.0
2,761,133 - PS417_12690 0.44 +0.4
2,761,451 - PS417_12690 0.66 -1.2
2,761,460 - PS417_12690 0.67 -0.3
2,761,869 + -0.1
2,761,870 - -0.3
2,762,062 - -0.3
2,762,095 - +0.9
2,762,095 - +1.0
2,762,098 + -0.1
2,762,099 - -0.6
2,762,099 - -0.6
2,762,116 - +0.7
2,762,116 - -0.1
2,762,116 - -0.6
2,762,308 + -1.1
2,762,309 - -0.1
2,762,341 + PS417_12695 0.16 -1.0
2,762,578 + PS417_12695 0.32 -1.2
2,762,590 + PS417_12695 0.33 -1.1
2,763,026 + PS417_12695 0.63 -1.4
2,763,172 + PS417_12695 0.73 -1.9
2,763,323 - PS417_12695 0.83 -1.6
2,763,448 + +0.4
2,763,449 - -1.1
2,763,449 - -0.2
2,763,507 - -1.1
2,763,520 + -1.4
2,764,037 - PS417_12700 0.40 +0.4
2,764,037 - PS417_12700 0.40 +0.2
2,764,136 - +1.4
2,764,441 + PS417_12700 0.76 -0.5
2,764,450 + PS417_12700 0.77 +1.0
2,764,450 + PS417_12700 0.77 -0.2
2,764,451 - PS417_12700 0.77 -2.3

Or see this region's nucleotide sequence