Strain Fitness in Pseudomonas simiae WCS417 around PS417_11360

Experiment: Fraxetin 2 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_11350 and PS417_11355 are separated by 11 nucleotidesPS417_11355 and PS417_11360 are separated by 3 nucleotidesPS417_11360 and PS417_11365 are separated by 42 nucleotides PS417_11350: PS417_11350 - biopolymer transporter ExbB, at 2,444,914 to 2,446,713 _11350 PS417_11355: PS417_11355 - biopolymer transporter ExbD, at 2,446,725 to 2,447,150 _11355 PS417_11360: PS417_11360 - energy transducer TonB, at 2,447,154 to 2,447,858 _11360 PS417_11365: PS417_11365 - membrane protein, at 2,447,901 to 2,449,601 _11365 Position (kb) 2447 2448Strain fitness (log2 ratio) -2 -1 0 1at 2446.169 kb on - strand, within PS417_11350at 2447.038 kb on + strandat 2447.039 kb on - strand, within PS417_11355at 2447.596 kb on - strand, within PS417_11360at 2447.598 kb on - strand, within PS417_11360at 2447.619 kb on + strand, within PS417_11360at 2447.896 kb on + strandat 2447.897 kb on - strandat 2447.897 kb on - strandat 2448.172 kb on - strand, within PS417_11365at 2448.367 kb on - strand, within PS417_11365at 2448.804 kb on + strandat 2448.805 kb on - strand, within PS417_11365at 2448.828 kb on - strand, within PS417_11365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
remove
2,446,169 - PS417_11350 0.70 -1.0
2,447,038 + -1.1
2,447,039 - PS417_11355 0.74 -0.8
2,447,596 - PS417_11360 0.63 -0.2
2,447,598 - PS417_11360 0.63 -0.6
2,447,619 + PS417_11360 0.66 -1.8
2,447,896 + -0.0
2,447,897 - -2.2
2,447,897 - +0.4
2,448,172 - PS417_11365 0.16 +0.2
2,448,367 - PS417_11365 0.27 -0.3
2,448,804 + -0.1
2,448,805 - PS417_11365 0.53 +0.1
2,448,828 - PS417_11365 0.54 -0.1

Or see this region's nucleotide sequence