Strain Fitness in Pseudomonas simiae WCS417 around PS417_11065

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11060 and PS417_11065 are separated by 91 nucleotidesPS417_11065 and PS417_11070 are separated by 114 nucleotides PS417_11060: PS417_11060 - transporter, at 2,370,602 to 2,371,825 _11060 PS417_11065: PS417_11065 - S-transferase, at 2,371,917 to 2,372,750 _11065 PS417_11070: PS417_11070 - rhizopine-binding protein, at 2,372,865 to 2,373,791 _11070 Position (kb) 2371 2372 2373Strain fitness (log2 ratio) -1 0 1 2at 2371.071 kb on + strand, within PS417_11060at 2371.115 kb on - strand, within PS417_11060at 2371.290 kb on + strand, within PS417_11060at 2371.320 kb on - strand, within PS417_11060at 2371.320 kb on - strand, within PS417_11060at 2371.437 kb on + strand, within PS417_11060at 2371.912 kb on + strandat 2372.052 kb on + strand, within PS417_11065at 2372.052 kb on + strand, within PS417_11065at 2372.053 kb on - strand, within PS417_11065at 2372.134 kb on - strand, within PS417_11065at 2372.376 kb on + strand, within PS417_11065at 2372.403 kb on + strand, within PS417_11065at 2372.409 kb on + strand, within PS417_11065at 2372.409 kb on + strand, within PS417_11065at 2372.430 kb on + strand, within PS417_11065at 2372.523 kb on + strand, within PS417_11065at 2372.524 kb on - strand, within PS417_11065at 2372.583 kb on + strand, within PS417_11065at 2372.748 kb on + strandat 2372.867 kb on - strandat 2372.873 kb on - strandat 2373.194 kb on + strand, within PS417_11070at 2373.540 kb on + strand, within PS417_11070at 2373.541 kb on - strandat 2373.541 kb on - strandat 2373.676 kb on + strand, within PS417_11070at 2373.677 kb on - strand, within PS417_11070at 2373.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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2,371,071 + PS417_11060 0.38 -0.9
2,371,115 - PS417_11060 0.42 -0.3
2,371,290 + PS417_11060 0.56 -0.1
2,371,320 - PS417_11060 0.59 -1.4
2,371,320 - PS417_11060 0.59 -0.5
2,371,437 + PS417_11060 0.68 +0.5
2,371,912 + +0.9
2,372,052 + PS417_11065 0.16 +2.0
2,372,052 + PS417_11065 0.16 -0.3
2,372,053 - PS417_11065 0.16 -0.4
2,372,134 - PS417_11065 0.26 +0.2
2,372,376 + PS417_11065 0.55 -0.1
2,372,403 + PS417_11065 0.58 +0.0
2,372,409 + PS417_11065 0.59 +0.2
2,372,409 + PS417_11065 0.59 +0.2
2,372,430 + PS417_11065 0.62 +1.2
2,372,523 + PS417_11065 0.73 -0.2
2,372,524 - PS417_11065 0.73 +0.6
2,372,583 + PS417_11065 0.80 +2.1
2,372,748 + -0.7
2,372,867 - +0.0
2,372,873 - +0.6
2,373,194 + PS417_11070 0.35 -0.8
2,373,540 + PS417_11070 0.73 -0.3
2,373,541 - +1.9
2,373,541 - +0.1
2,373,676 + PS417_11070 0.87 +0.1
2,373,677 - PS417_11070 0.88 -0.4
2,373,677 - +0.9

Or see this region's nucleotide sequence