Strain Fitness in Pseudomonas simiae WCS417 around PS417_09620

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09615 and PS417_09620 overlap by 1 nucleotidesPS417_09620 and PS417_09625 are separated by 14 nucleotidesPS417_09625 and PS417_09630 are separated by 29 nucleotides PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936 _09615 PS417_09620: PS417_09620 - lipopolysaccharide biosynthesis protein, at 2,083,936 to 2,085,927 _09620 PS417_09625: PS417_09625 - sugar ABC transporter substrate-binding protein, at 2,085,942 to 2,086,718 _09625 PS417_09630: PS417_09630 - glycosyl transferase, at 2,086,748 to 2,087,659 _09630 Position (kb) 2083 2084 2085 2086Strain fitness (log2 ratio) -2 -1 0 1at 2083.204 kb on - strand, within PS417_09615at 2083.204 kb on - strand, within PS417_09615at 2083.345 kb on + strand, within PS417_09615at 2083.357 kb on - strand, within PS417_09615at 2083.881 kb on + strandat 2083.956 kb on + strandat 2084.349 kb on - strand, within PS417_09620at 2084.349 kb on - strand, within PS417_09620at 2084.357 kb on + strandat 2084.358 kb on - strand, within PS417_09620at 2084.358 kb on - strand, within PS417_09620at 2084.383 kb on - strand, within PS417_09620at 2084.487 kb on - strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.496 kb on - strand, within PS417_09620at 2084.496 kb on - strand, within PS417_09620at 2084.662 kb on - strand, within PS417_09620at 2084.669 kb on + strand, within PS417_09620at 2084.669 kb on + strand, within PS417_09620at 2084.679 kb on - strand, within PS417_09620at 2084.975 kb on + strand, within PS417_09620at 2084.976 kb on - strand, within PS417_09620at 2084.976 kb on - strand, within PS417_09620at 2085.302 kb on + strand, within PS417_09620at 2085.302 kb on + strand, within PS417_09620at 2085.303 kb on - strand, within PS417_09620at 2085.312 kb on - strand, within PS417_09620at 2085.353 kb on + strand, within PS417_09620at 2085.572 kb on + strand, within PS417_09620at 2085.573 kb on - strand, within PS417_09620at 2085.573 kb on - strand, within PS417_09620at 2085.575 kb on + strand, within PS417_09620at 2085.575 kb on + strand, within PS417_09620at 2085.576 kb on - strand, within PS417_09620at 2085.632 kb on + strandat 2085.801 kb on - strandat 2085.944 kb on - strandat 2085.970 kb on + strandat 2086.021 kb on + strand, within PS417_09625at 2086.025 kb on + strand, within PS417_09625at 2086.489 kb on + strand, within PS417_09625at 2086.668 kb on - strandat 2086.854 kb on - strand, within PS417_09630at 2086.860 kb on - strand, within PS417_09630at 2086.920 kb on + strand, within PS417_09630

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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2,083,204 - PS417_09615 0.38 -1.0
2,083,204 - PS417_09615 0.38 -0.4
2,083,345 + PS417_09615 0.50 -0.5
2,083,357 - PS417_09615 0.51 -1.0
2,083,881 + -0.2
2,083,956 + -2.1
2,084,349 - PS417_09620 0.21 -0.7
2,084,349 - PS417_09620 0.21 -0.7
2,084,357 + -0.7
2,084,358 - PS417_09620 0.21 -2.1
2,084,358 - PS417_09620 0.21 -0.9
2,084,383 - PS417_09620 0.22 -0.6
2,084,487 - PS417_09620 0.28 -0.3
2,084,495 + PS417_09620 0.28 -0.6
2,084,495 + PS417_09620 0.28 -1.2
2,084,495 + PS417_09620 0.28 -2.4
2,084,495 + PS417_09620 0.28 -1.5
2,084,496 - PS417_09620 0.28 +0.4
2,084,496 - PS417_09620 0.28 -1.0
2,084,662 - PS417_09620 0.36 -0.8
2,084,669 + PS417_09620 0.37 -1.1
2,084,669 + PS417_09620 0.37 -1.5
2,084,679 - PS417_09620 0.37 -1.2
2,084,975 + PS417_09620 0.52 -1.2
2,084,976 - PS417_09620 0.52 +0.2
2,084,976 - PS417_09620 0.52 -0.4
2,085,302 + PS417_09620 0.69 -1.1
2,085,302 + PS417_09620 0.69 -1.2
2,085,303 - PS417_09620 0.69 -1.0
2,085,312 - PS417_09620 0.69 -1.5
2,085,353 + PS417_09620 0.71 -1.5
2,085,572 + PS417_09620 0.82 -0.6
2,085,573 - PS417_09620 0.82 -0.4
2,085,573 - PS417_09620 0.82 -1.0
2,085,575 + PS417_09620 0.82 -1.8
2,085,575 + PS417_09620 0.82 -1.1
2,085,576 - PS417_09620 0.82 +0.1
2,085,632 + -0.7
2,085,801 - -0.5
2,085,944 - +0.1
2,085,970 + -1.1
2,086,021 + PS417_09625 0.10 -2.2
2,086,025 + PS417_09625 0.11 -0.4
2,086,489 + PS417_09625 0.70 -1.0
2,086,668 - -1.5
2,086,854 - PS417_09630 0.12 -0.4
2,086,860 - PS417_09630 0.12 -0.2
2,086,920 + PS417_09630 0.19 +0.1

Or see this region's nucleotide sequence