Strain Fitness in Pseudomonas simiae WCS417 around PS417_25225

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25215 and PS417_25220 are separated by 43 nucleotidesPS417_25220 and PS417_25225 overlap by 4 nucleotidesPS417_25225 and PS417_25230 overlap by 4 nucleotidesPS417_25230 and PS417_25235 are separated by 150 nucleotides PS417_25215: PS417_25215 - hypothetical protein, at 5,466,396 to 5,466,602 _25215 PS417_25220: PS417_25220 - iron-hydroxamate ABC transporter substrate-binding protein, at 5,466,646 to 5,467,434 _25220 PS417_25225: PS417_25225 - MFS transporter, at 5,467,431 to 5,467,850 _25225 PS417_25230: PS417_25230 - GTP cyclohydrolase, at 5,467,847 to 5,468,464 _25230 PS417_25235: PS417_25235 - ABC transporter substrate-binding protein, at 5,468,615 to 5,469,334 _25235 Position (kb) 5467 5468Strain fitness (log2 ratio) -1 0 1at 5466.655 kb on - strandat 5466.933 kb on + strand, within PS417_25220at 5466.936 kb on - strand, within PS417_25220at 5466.936 kb on - strand, within PS417_25220at 5466.953 kb on - strand, within PS417_25220at 5467.107 kb on + strand, within PS417_25220at 5467.213 kb on + strand, within PS417_25220at 5467.438 kb on - strandat 5467.462 kb on + strandat 5467.462 kb on + strandat 5467.463 kb on - strandat 5467.463 kb on - strandat 5467.658 kb on + strand, within PS417_25225at 5467.658 kb on + strand, within PS417_25225at 5467.802 kb on - strand, within PS417_25225at 5468.505 kb on + strandat 5468.506 kb on - strandat 5468.548 kb on + strandat 5468.587 kb on - strandat 5468.587 kb on - strandat 5468.591 kb on - strandat 5468.616 kb on + strandat 5468.616 kb on + strandat 5468.617 kb on - strandat 5468.617 kb on - strandat 5468.617 kb on - strandat 5468.700 kb on - strandat 5468.700 kb on - strand, within PS417_25235at 5468.745 kb on + strand, within PS417_25235at 5468.745 kb on + strand, within PS417_25235at 5468.745 kb on + strand, within PS417_25235at 5468.745 kb on + strand, within PS417_25235at 5468.745 kb on + strand, within PS417_25235at 5468.746 kb on - strand, within PS417_25235at 5468.811 kb on + strand, within PS417_25235at 5468.812 kb on - strand, within PS417_25235at 5468.812 kb on - strand, within PS417_25235at 5468.838 kb on + strand, within PS417_25235at 5468.839 kb on - strand, within PS417_25235at 5468.839 kb on - strand, within PS417_25235

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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5,466,655 - -1.7
5,466,933 + PS417_25220 0.36 -0.2
5,466,936 - PS417_25220 0.37 +0.1
5,466,936 - PS417_25220 0.37 -0.4
5,466,953 - PS417_25220 0.39 -0.3
5,467,107 + PS417_25220 0.58 +0.1
5,467,213 + PS417_25220 0.72 +0.4
5,467,438 - -0.2
5,467,462 + +0.3
5,467,462 + +0.0
5,467,463 - +0.6
5,467,463 - -0.2
5,467,658 + PS417_25225 0.54 -1.7
5,467,658 + PS417_25225 0.54 -1.0
5,467,802 - PS417_25225 0.88 +0.1
5,468,505 + -1.7
5,468,506 - -0.1
5,468,548 + +0.4
5,468,587 - -0.1
5,468,587 - -1.0
5,468,591 - +0.8
5,468,616 + +1.2
5,468,616 + -0.2
5,468,617 - -1.0
5,468,617 - -1.4
5,468,617 - +0.3
5,468,700 - -0.0
5,468,700 - PS417_25235 0.12 +0.1
5,468,745 + PS417_25235 0.18 -0.5
5,468,745 + PS417_25235 0.18 -0.3
5,468,745 + PS417_25235 0.18 -0.3
5,468,745 + PS417_25235 0.18 +0.5
5,468,745 + PS417_25235 0.18 +0.4
5,468,746 - PS417_25235 0.18 +0.1
5,468,811 + PS417_25235 0.27 -0.0
5,468,812 - PS417_25235 0.27 +0.1
5,468,812 - PS417_25235 0.27 +0.7
5,468,838 + PS417_25235 0.31 +0.5
5,468,839 - PS417_25235 0.31 +0.1
5,468,839 - PS417_25235 0.31 +0.3

Or see this region's nucleotide sequence