Strain Fitness in Pseudomonas simiae WCS417 around PS417_22550

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22540 and PS417_22545 are separated by 305 nucleotidesPS417_22545 and PS417_22550 are separated by 4 nucleotidesPS417_22550 and PS417_22555 are separated by 204 nucleotides PS417_22540: PS417_22540 - preprotein translocase subunit SecA, at 4,878,970 to 4,881,705 _22540 PS417_22545: PS417_22545 - hypothetical protein, at 4,882,011 to 4,882,466 _22545 PS417_22550: PS417_22550 - ATP-binding protein, at 4,882,471 to 4,883,949 _22550 PS417_22555: PS417_22555 - chemotaxis protein, at 4,884,154 to 4,886,043 _22555 Position (kb) 4882 4883 4884Strain fitness (log2 ratio) -1 0 1at 4881.728 kb on - strandat 4881.906 kb on - strandat 4881.911 kb on - strandat 4881.930 kb on - strandat 4881.993 kb on + strandat 4881.997 kb on + strandat 4881.998 kb on - strandat 4881.998 kb on - strandat 4882.956 kb on + strand, within PS417_22550at 4882.956 kb on + strand, within PS417_22550at 4882.959 kb on + strand, within PS417_22550at 4882.959 kb on + strand, within PS417_22550at 4883.045 kb on + strand, within PS417_22550at 4883.129 kb on - strand, within PS417_22550at 4883.234 kb on + strand, within PS417_22550at 4883.613 kb on + strand, within PS417_22550at 4883.973 kb on - strandat 4884.024 kb on - strandat 4884.032 kb on + strandat 4884.033 kb on - strandat 4884.033 kb on - strandat 4884.069 kb on + strandat 4884.128 kb on + strandat 4884.128 kb on + strandat 4884.128 kb on + strandat 4884.160 kb on - strandat 4884.238 kb on + strandat 4884.287 kb on - strandat 4884.347 kb on + strand, within PS417_22555at 4884.348 kb on - strand, within PS417_22555at 4884.538 kb on + strand, within PS417_22555at 4884.539 kb on - strand, within PS417_22555at 4884.539 kb on - strand, within PS417_22555at 4884.583 kb on + strand, within PS417_22555at 4884.584 kb on - strand, within PS417_22555at 4884.584 kb on - strand, within PS417_22555at 4884.584 kb on - strand, within PS417_22555at 4884.584 kb on - strand, within PS417_22555at 4884.586 kb on - strand, within PS417_22555at 4884.586 kb on - strand, within PS417_22555at 4884.660 kb on - strand, within PS417_22555at 4884.730 kb on + strand, within PS417_22555at 4884.767 kb on + strand, within PS417_22555at 4884.809 kb on + strand, within PS417_22555at 4884.809 kb on + strand, within PS417_22555at 4884.809 kb on + strand, within PS417_22555at 4884.810 kb on - strand, within PS417_22555at 4884.877 kb on - strand, within PS417_22555at 4884.890 kb on + strand, within PS417_22555

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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4,881,728 - +0.1
4,881,906 - -0.6
4,881,911 - -0.2
4,881,930 - -0.2
4,881,993 + -1.4
4,881,997 + +0.1
4,881,998 - -1.1
4,881,998 - -0.9
4,882,956 + PS417_22550 0.33 -0.4
4,882,956 + PS417_22550 0.33 -1.0
4,882,959 + PS417_22550 0.33 -0.1
4,882,959 + PS417_22550 0.33 -0.2
4,883,045 + PS417_22550 0.39 -0.1
4,883,129 - PS417_22550 0.44 +0.2
4,883,234 + PS417_22550 0.52 +0.2
4,883,613 + PS417_22550 0.77 +0.9
4,883,973 - +0.3
4,884,024 - +0.2
4,884,032 + -0.1
4,884,033 - -0.7
4,884,033 - -1.2
4,884,069 + +0.7
4,884,128 + +0.9
4,884,128 + +0.0
4,884,128 + -0.0
4,884,160 - +0.2
4,884,238 + +0.2
4,884,287 - -0.1
4,884,347 + PS417_22555 0.10 +0.1
4,884,348 - PS417_22555 0.10 -0.8
4,884,538 + PS417_22555 0.20 -0.3
4,884,539 - PS417_22555 0.20 -0.2
4,884,539 - PS417_22555 0.20 -0.3
4,884,583 + PS417_22555 0.23 -0.1
4,884,584 - PS417_22555 0.23 -0.3
4,884,584 - PS417_22555 0.23 -0.4
4,884,584 - PS417_22555 0.23 +0.0
4,884,584 - PS417_22555 0.23 -0.7
4,884,586 - PS417_22555 0.23 +1.3
4,884,586 - PS417_22555 0.23 -1.1
4,884,660 - PS417_22555 0.27 -0.5
4,884,730 + PS417_22555 0.30 +0.3
4,884,767 + PS417_22555 0.32 +0.1
4,884,809 + PS417_22555 0.35 +0.3
4,884,809 + PS417_22555 0.35 +0.1
4,884,809 + PS417_22555 0.35 -0.2
4,884,810 - PS417_22555 0.35 -0.1
4,884,877 - PS417_22555 0.38 -0.3
4,884,890 + PS417_22555 0.39 -0.1

Or see this region's nucleotide sequence