Strain Fitness in Pseudomonas simiae WCS417 around PS417_15495

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15485 and PS417_15490 overlap by 4 nucleotidesPS417_15490 and PS417_15495 overlap by 4 nucleotidesPS417_15495 and PS417_15500 are separated by 128 nucleotides PS417_15485: PS417_15485 - amino acid ABC transporter permease, at 3,392,752 to 3,393,420 _15485 PS417_15490: PS417_15490 - glutamine ABC transporter ATP-binding protein, at 3,393,417 to 3,394,169 _15490 PS417_15495: PS417_15495 - FAD-dependent oxidoreductase, at 3,394,166 to 3,395,434 _15495 PS417_15500: PS417_15500 - membrane protein, at 3,395,563 to 3,396,330 _15500 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -1 0 1at 3393.344 kb on - strand, within PS417_15485at 3393.371 kb on - strandat 3393.574 kb on - strand, within PS417_15490at 3393.727 kb on - strand, within PS417_15490at 3394.053 kb on + strand, within PS417_15490at 3394.054 kb on - strand, within PS417_15490at 3394.054 kb on - strand, within PS417_15490at 3394.054 kb on - strand, within PS417_15490at 3395.226 kb on + strand, within PS417_15495at 3395.269 kb on + strand, within PS417_15495at 3395.378 kb on + strandat 3395.404 kb on + strandat 3395.450 kb on - strandat 3395.539 kb on + strandat 3395.540 kb on - strandat 3395.617 kb on + strandat 3395.632 kb on + strandat 3395.632 kb on + strandat 3395.718 kb on + strand, within PS417_15500at 3395.774 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.855 kb on - strandat 3395.855 kb on - strand, within PS417_15500at 3395.855 kb on - strand, within PS417_15500at 3395.855 kb on - strand, within PS417_15500at 3396.104 kb on - strand, within PS417_15500at 3396.104 kb on - strand, within PS417_15500at 3396.106 kb on - strand, within PS417_15500at 3396.106 kb on - strand, within PS417_15500at 3396.183 kb on - strand, within PS417_15500at 3396.183 kb on - strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.227 kb on - strand, within PS417_15500at 3396.342 kb on + strandat 3396.427 kb on + strandat 3396.428 kb on - strandat 3396.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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3,393,344 - PS417_15485 0.88 -0.2
3,393,371 - +0.2
3,393,574 - PS417_15490 0.21 -0.1
3,393,727 - PS417_15490 0.41 -0.0
3,394,053 + PS417_15490 0.84 +0.0
3,394,054 - PS417_15490 0.85 -0.2
3,394,054 - PS417_15490 0.85 -0.8
3,394,054 - PS417_15490 0.85 -0.2
3,395,226 + PS417_15495 0.84 -0.7
3,395,269 + PS417_15495 0.87 -0.8
3,395,378 + -0.0
3,395,404 + -0.3
3,395,450 - +0.4
3,395,539 + -0.2
3,395,540 - -0.3
3,395,617 + +0.9
3,395,632 + +0.0
3,395,632 + +0.4
3,395,718 + PS417_15500 0.20 +0.1
3,395,774 + PS417_15500 0.27 -0.3
3,395,854 + PS417_15500 0.38 -0.6
3,395,854 + PS417_15500 0.38 +0.2
3,395,854 + PS417_15500 0.38 +0.9
3,395,855 - -1.0
3,395,855 - PS417_15500 0.38 +0.2
3,395,855 - PS417_15500 0.38 -0.9
3,395,855 - PS417_15500 0.38 -0.1
3,396,104 - PS417_15500 0.70 -1.0
3,396,104 - PS417_15500 0.70 +0.4
3,396,106 - PS417_15500 0.71 +0.4
3,396,106 - PS417_15500 0.71 -0.2
3,396,183 - PS417_15500 0.81 +0.2
3,396,183 - PS417_15500 0.81 +0.3
3,396,226 + PS417_15500 0.86 +0.2
3,396,226 + PS417_15500 0.86 +1.0
3,396,226 + PS417_15500 0.86 +0.9
3,396,227 - PS417_15500 0.86 +0.3
3,396,342 + +0.2
3,396,427 + -0.4
3,396,428 - -0.1
3,396,428 - -0.1

Or see this region's nucleotide sequence