Strain Fitness in Pseudomonas simiae WCS417 around PS417_14040

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14030 and PS417_14035 are separated by 196 nucleotidesPS417_14035 and PS417_14040 are separated by 49 nucleotidesPS417_14040 and PS417_14045 are separated by 127 nucleotidesPS417_14045 and PS417_14050 are separated by 143 nucleotides PS417_14030: PS417_14030 - hypothetical protein, at 3,082,197 to 3,082,733 _14030 PS417_14035: PS417_14035 - lactoylglutathione lyase, at 3,082,930 to 3,083,451 _14035 PS417_14040: PS417_14040 - alkyl hydroperoxide reductase, at 3,083,501 to 3,085,066 _14040 PS417_14045: PS417_14045 - alkyl hydroperoxide reductase, at 3,085,194 to 3,085,757 _14045 PS417_14050: PS417_14050 - recombinase, at 3,085,901 to 3,086,827 _14050 Position (kb) 3083 3084 3085 3086Strain fitness (log2 ratio) -2 -1 0 1 2at 3082.719 kb on - strandat 3083.053 kb on + strand, within PS417_14035at 3083.053 kb on + strand, within PS417_14035at 3083.120 kb on - strand, within PS417_14035at 3083.173 kb on - strand, within PS417_14035at 3083.262 kb on + strandat 3083.265 kb on + strand, within PS417_14035at 3083.296 kb on - strand, within PS417_14035at 3083.296 kb on - strand, within PS417_14035at 3083.430 kb on + strandat 3083.503 kb on - strandat 3083.589 kb on + strandat 3083.738 kb on - strand, within PS417_14040at 3083.784 kb on + strand, within PS417_14040at 3083.785 kb on - strandat 3083.868 kb on + strand, within PS417_14040at 3083.868 kb on + strand, within PS417_14040at 3083.868 kb on + strand, within PS417_14040at 3084.060 kb on + strand, within PS417_14040at 3084.061 kb on - strand, within PS417_14040at 3084.061 kb on - strand, within PS417_14040at 3084.061 kb on - strand, within PS417_14040at 3084.239 kb on + strandat 3084.240 kb on - strandat 3084.240 kb on - strand, within PS417_14040at 3084.370 kb on + strand, within PS417_14040at 3084.382 kb on - strand, within PS417_14040at 3084.700 kb on - strand, within PS417_14040at 3084.700 kb on - strand, within PS417_14040at 3085.030 kb on - strandat 3085.048 kb on + strandat 3085.048 kb on + strandat 3085.049 kb on - strandat 3085.067 kb on - strandat 3085.094 kb on - strandat 3085.156 kb on - strandat 3085.232 kb on + strandat 3085.233 kb on - strandat 3085.289 kb on - strand, within PS417_14045at 3085.289 kb on - strand, within PS417_14045at 3085.394 kb on + strand, within PS417_14045at 3085.477 kb on + strandat 3085.478 kb on - strand, within PS417_14045at 3085.585 kb on + strand, within PS417_14045at 3085.585 kb on + strand, within PS417_14045at 3085.643 kb on - strand, within PS417_14045at 3085.693 kb on - strand, within PS417_14045at 3085.711 kb on + strandat 3085.734 kb on + strandat 3085.781 kb on + strandat 3085.782 kb on - strandat 3085.791 kb on + strandat 3085.888 kb on - strandat 3085.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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3,082,719 - +2.0
3,083,053 + PS417_14035 0.24 -0.2
3,083,053 + PS417_14035 0.24 -0.3
3,083,120 - PS417_14035 0.36 -1.1
3,083,173 - PS417_14035 0.47 -0.3
3,083,262 + +0.4
3,083,265 + PS417_14035 0.64 -0.2
3,083,296 - PS417_14035 0.70 -0.4
3,083,296 - PS417_14035 0.70 -0.2
3,083,430 + -0.1
3,083,503 - -0.3
3,083,589 + -0.5
3,083,738 - PS417_14040 0.15 +0.0
3,083,784 + PS417_14040 0.18 -0.5
3,083,785 - -0.6
3,083,868 + PS417_14040 0.23 +0.8
3,083,868 + PS417_14040 0.23 -2.1
3,083,868 + PS417_14040 0.23 -0.6
3,084,060 + PS417_14040 0.36 -1.0
3,084,061 - PS417_14040 0.36 -0.3
3,084,061 - PS417_14040 0.36 -1.3
3,084,061 - PS417_14040 0.36 -0.2
3,084,239 + -0.4
3,084,240 - -0.4
3,084,240 - PS417_14040 0.47 -0.3
3,084,370 + PS417_14040 0.55 -0.4
3,084,382 - PS417_14040 0.56 -0.8
3,084,700 - PS417_14040 0.77 -0.9
3,084,700 - PS417_14040 0.77 -1.2
3,085,030 - -0.7
3,085,048 + -0.6
3,085,048 + -0.5
3,085,049 - -0.7
3,085,067 - -1.2
3,085,094 - +0.3
3,085,156 - -0.4
3,085,232 + -1.3
3,085,233 - -0.9
3,085,289 - PS417_14045 0.17 -1.2
3,085,289 - PS417_14045 0.17 -2.7
3,085,394 + PS417_14045 0.35 -1.2
3,085,477 + -1.1
3,085,478 - PS417_14045 0.50 -0.4
3,085,585 + PS417_14045 0.69 -2.7
3,085,585 + PS417_14045 0.69 +0.1
3,085,643 - PS417_14045 0.80 -0.8
3,085,693 - PS417_14045 0.88 -1.7
3,085,711 + -1.3
3,085,734 + -0.7
3,085,781 + -1.9
3,085,782 - +0.2
3,085,791 + -1.6
3,085,888 - -0.4
3,085,992 + -0.7

Or see this region's nucleotide sequence