Strain Fitness in Pseudomonas simiae WCS417 around PS417_11500

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11495 and PS417_11500 are separated by 9 nucleotidesPS417_11500 and PS417_11505 are separated by 14 nucleotides PS417_11495: PS417_11495 - oxidoreductase, at 2,472,150 to 2,473,109 _11495 PS417_11500: PS417_11500 - hypothetical protein, at 2,473,119 to 2,474,147 _11500 PS417_11505: PS417_11505 - ion channel protein Tsx, at 2,474,162 to 2,475,109 _11505 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -1 0 1at 2472.441 kb on + strand, within PS417_11495at 2472.686 kb on - strand, within PS417_11495at 2472.873 kb on + strand, within PS417_11495at 2472.874 kb on - strand, within PS417_11495at 2472.874 kb on - strand, within PS417_11495at 2472.877 kb on + strandat 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.878 kb on - strand, within PS417_11495at 2472.942 kb on + strand, within PS417_11495at 2472.943 kb on - strand, within PS417_11495at 2473.060 kb on - strandat 2473.060 kb on - strandat 2473.060 kb on - strandat 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.834 kb on + strand, within PS417_11500at 2474.149 kb on + strandat 2474.150 kb on - strandat 2474.188 kb on - strandat 2474.278 kb on - strand, within PS417_11505at 2474.412 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.458 kb on - strand, within PS417_11505at 2474.634 kb on + strand, within PS417_11505at 2474.655 kb on + strand, within PS417_11505at 2474.714 kb on - strandat 2474.770 kb on + strand, within PS417_11505at 2474.808 kb on + strand, within PS417_11505at 2474.845 kb on - strand, within PS417_11505at 2474.859 kb on + strand, within PS417_11505at 2474.859 kb on + strandat 2474.890 kb on + strand, within PS417_11505at 2474.906 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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2,472,441 + PS417_11495 0.30 -1.7
2,472,686 - PS417_11495 0.56 +0.1
2,472,873 + PS417_11495 0.75 -0.3
2,472,874 - PS417_11495 0.75 -0.1
2,472,874 - PS417_11495 0.75 -0.1
2,472,877 + -0.3
2,472,877 + PS417_11495 0.76 +0.2
2,472,877 + PS417_11495 0.76 -0.4
2,472,877 + PS417_11495 0.76 -0.2
2,472,877 + PS417_11495 0.76 -1.1
2,472,877 + PS417_11495 0.76 -0.2
2,472,877 + PS417_11495 0.76 -0.3
2,472,877 + PS417_11495 0.76 +0.2
2,472,878 - PS417_11495 0.76 +0.1
2,472,942 + PS417_11495 0.82 -0.8
2,472,943 - PS417_11495 0.83 +0.0
2,473,060 - +0.7
2,473,060 - -0.2
2,473,060 - +0.3
2,473,363 + PS417_11500 0.24 +0.1
2,473,363 + PS417_11500 0.24 +0.2
2,473,363 + PS417_11500 0.24 +1.0
2,473,364 - PS417_11500 0.24 +0.7
2,473,364 - PS417_11500 0.24 +0.5
2,473,364 - PS417_11500 0.24 +0.0
2,473,834 + PS417_11500 0.69 +0.1
2,474,149 + +0.3
2,474,150 - -0.7
2,474,188 - -0.7
2,474,278 - PS417_11505 0.12 -0.3
2,474,412 + PS417_11505 0.26 +0.2
2,474,457 + PS417_11505 0.31 -1.2
2,474,457 + PS417_11505 0.31 +0.7
2,474,458 - PS417_11505 0.31 +0.1
2,474,634 + PS417_11505 0.50 +0.7
2,474,655 + PS417_11505 0.52 -0.1
2,474,714 - +1.5
2,474,770 + PS417_11505 0.64 -0.2
2,474,808 + PS417_11505 0.68 -0.4
2,474,845 - PS417_11505 0.72 +0.4
2,474,859 + PS417_11505 0.74 +0.4
2,474,859 + +1.6
2,474,890 + PS417_11505 0.77 -0.4
2,474,906 + PS417_11505 0.78 -0.5
2,474,943 + PS417_11505 0.82 -0.3
2,474,943 + PS417_11505 0.82 +0.2
2,474,943 + PS417_11505 0.82 -0.6

Or see this region's nucleotide sequence