Strain Fitness in Pseudomonas simiae WCS417 around PS417_11075

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11070 and PS417_11075 are separated by 19 nucleotidesPS417_11075 and PS417_11080 overlap by 4 nucleotides PS417_11070: PS417_11070 - rhizopine-binding protein, at 2,372,865 to 2,373,791 _11070 PS417_11075: PS417_11075 - hydroxypyruvate isomerase, at 2,373,811 to 2,374,590 _11075 PS417_11080: PS417_11080 - dehydrogenase, at 2,374,587 to 2,375,591 _11080 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -1 0 1at 2372.867 kb on - strandat 2372.873 kb on - strandat 2373.194 kb on + strand, within PS417_11070at 2373.540 kb on + strand, within PS417_11070at 2373.541 kb on - strandat 2373.541 kb on - strandat 2373.676 kb on + strand, within PS417_11070at 2373.677 kb on - strand, within PS417_11070at 2373.677 kb on - strandat 2373.781 kb on + strandat 2373.807 kb on - strandat 2373.807 kb on - strandat 2373.812 kb on + strandat 2373.814 kb on + strandat 2374.055 kb on + strand, within PS417_11075at 2374.414 kb on - strand, within PS417_11075at 2374.415 kb on + strand, within PS417_11075at 2374.415 kb on + strand, within PS417_11075at 2374.415 kb on + strand, within PS417_11075at 2374.416 kb on - strand, within PS417_11075at 2374.522 kb on + strandat 2374.590 kb on + strandat 2374.590 kb on + strandat 2374.591 kb on - strandat 2374.729 kb on + strand, within PS417_11080

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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2,372,867 - +0.0
2,372,873 - -0.1
2,373,194 + PS417_11070 0.35 -0.3
2,373,540 + PS417_11070 0.73 -0.2
2,373,541 - +1.2
2,373,541 - +0.9
2,373,676 + PS417_11070 0.87 +0.8
2,373,677 - PS417_11070 0.88 +0.2
2,373,677 - -0.8
2,373,781 + -0.6
2,373,807 - -0.2
2,373,807 - +0.1
2,373,812 + -0.5
2,373,814 + -0.0
2,374,055 + PS417_11075 0.31 -1.2
2,374,414 - PS417_11075 0.77 -0.1
2,374,415 + PS417_11075 0.77 -1.1
2,374,415 + PS417_11075 0.77 -1.1
2,374,415 + PS417_11075 0.77 -0.2
2,374,416 - PS417_11075 0.78 -1.5
2,374,522 + -0.3
2,374,590 + -0.4
2,374,590 + -0.4
2,374,591 - -0.1
2,374,729 + PS417_11080 0.14 -0.1

Or see this region's nucleotide sequence