Strain Fitness in Pseudomonas simiae WCS417 around PS417_09330

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09325 and PS417_09330 are separated by 105 nucleotidesPS417_09330 and PS417_09335 are separated by 144 nucleotidesPS417_09335 and PS417_09340 are separated by 30 nucleotides PS417_09325: PS417_09325 - peptidase S41, at 2,022,777 to 2,024,891 _09325 PS417_09330: PS417_09330 - NAD(P)H-quinone oxidoreductase, at 2,024,997 to 2,025,959 _09330 PS417_09335: PS417_09335 - HAD family hydrolase, at 2,026,104 to 2,026,757 _09335 PS417_09340: PS417_09340 - spermidine/putrescine ABC transporter ATP-binding protein, at 2,026,788 to 2,027,777 _09340 Position (kb) 2024 2025 2026Strain fitness (log2 ratio) -2 -1 0 1 2at 2024.157 kb on - strand, within PS417_09325at 2024.170 kb on + strand, within PS417_09325at 2024.171 kb on - strand, within PS417_09325at 2024.516 kb on - strand, within PS417_09325at 2024.522 kb on + strand, within PS417_09325at 2024.891 kb on + strandat 2024.891 kb on + strandat 2024.891 kb on + strandat 2024.892 kb on - strandat 2024.894 kb on + strandat 2024.894 kb on + strandat 2024.958 kb on - strandat 2025.053 kb on + strandat 2025.351 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330at 2026.012 kb on + strandat 2026.334 kb on - strand, within PS417_09335at 2026.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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2,024,157 - PS417_09325 0.65 -0.1
2,024,170 + PS417_09325 0.66 -0.2
2,024,171 - PS417_09325 0.66 -0.4
2,024,516 - PS417_09325 0.82 -1.2
2,024,522 + PS417_09325 0.83 +0.7
2,024,891 + -0.4
2,024,891 + +1.2
2,024,891 + -0.6
2,024,892 - +0.4
2,024,894 + -0.9
2,024,894 + -1.6
2,024,958 - +0.1
2,025,053 + +2.1
2,025,351 + PS417_09330 0.37 -2.0
2,025,624 + PS417_09330 0.65 -1.2
2,025,624 + PS417_09330 0.65 +0.0
2,025,742 + PS417_09330 0.77 -1.0
2,025,742 + PS417_09330 0.77 -1.1
2,026,012 + -0.5
2,026,334 - PS417_09335 0.35 -0.4
2,026,794 + -0.3

Or see this region's nucleotide sequence