Experiment: Fraxetin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11455 and PS417_11460 are separated by 41 nucleotides PS417_11460 and PS417_11465 are separated by 12 nucleotides
PS417_11455: PS417_11455 - hypothetical protein, at 2,465,457 to 2,467,010
_11455
PS417_11460: PS417_11460 - divalent metal cation transporter MntH, at 2,467,052 to 2,468,374
_11460
PS417_11465: PS417_11465 - LysR family transcriptional regulator, at 2,468,387 to 2,469,319
_11465
Position (kb)
2467
2468
2469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2466.109 kb on - strand, within PS417_11455 at 2466.214 kb on - strand, within PS417_11455 at 2466.543 kb on - strand, within PS417_11455 at 2467.011 kb on + strand at 2467.350 kb on + strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.745 kb on + strand, within PS417_11460 at 2467.746 kb on - strand, within PS417_11460 at 2468.070 kb on - strand, within PS417_11460 at 2468.084 kb on - strand, within PS417_11460 at 2468.148 kb on + strand, within PS417_11460 at 2468.231 kb on + strand, within PS417_11460 at 2468.423 kb on + strand at 2468.665 kb on + strand, within PS417_11465 at 2468.666 kb on - strand, within PS417_11465 at 2468.666 kb on - strand at 2468.666 kb on - strand, within PS417_11465 at 2468.667 kb on + strand, within PS417_11465 at 2468.667 kb on + strand, within PS417_11465 at 2468.668 kb on - strand, within PS417_11465 at 2468.668 kb on - strand, within PS417_11465 at 2468.794 kb on - strand, within PS417_11465 at 2468.913 kb on + strand, within PS417_11465 at 2468.933 kb on - strand, within PS417_11465 at 2469.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 0.5 mM; solid stress remove 2,466,109 - PS417_11455 0.42 +0.3 2,466,214 - PS417_11455 0.49 +0.4 2,466,543 - PS417_11455 0.70 +0.3 2,467,011 + +0.2 2,467,350 + PS417_11460 0.23 -0.8 2,467,351 - PS417_11460 0.23 -0.5 2,467,351 - PS417_11460 0.23 -0.3 2,467,351 - PS417_11460 0.23 -0.8 2,467,745 + PS417_11460 0.52 -1.9 2,467,746 - PS417_11460 0.52 -1.4 2,468,070 - PS417_11460 0.77 +0.5 2,468,084 - PS417_11460 0.78 -1.4 2,468,148 + PS417_11460 0.83 -0.6 2,468,231 + PS417_11460 0.89 -1.4 2,468,423 + +0.8 2,468,665 + PS417_11465 0.30 -0.7 2,468,666 - PS417_11465 0.30 +0.3 2,468,666 - -0.1 2,468,666 - PS417_11465 0.30 -0.5 2,468,667 + PS417_11465 0.30 -0.2 2,468,667 + PS417_11465 0.30 +1.9 2,468,668 - PS417_11465 0.30 -2.2 2,468,668 - PS417_11465 0.30 -0.4 2,468,794 - PS417_11465 0.44 -0.3 2,468,913 + PS417_11465 0.56 +0.7 2,468,933 - PS417_11465 0.59 -0.1 2,469,257 + -0.4
Or see this region's nucleotide sequence