Experiment: Fraxetin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11365 and PS417_11370 are separated by 18 nucleotides PS417_11370 and PS417_11375 are separated by 14 nucleotides PS417_11375 and PS417_11380 overlap by 4 nucleotides PS417_11380 and PS417_11385 are separated by 51 nucleotides
PS417_11365: PS417_11365 - membrane protein, at 2,447,901 to 2,449,601
_11365
PS417_11370: PS417_11370 - DNA repair protein, at 2,449,620 to 2,450,246
_11370
PS417_11375: PS417_11375 - hypothetical protein, at 2,450,261 to 2,450,719
_11375
PS417_11380: PS417_11380 - peptidylprolyl isomerase, at 2,450,716 to 2,451,657
_11380
PS417_11385: PS417_11385 - LysR family transcriptional regulator, at 2,451,709 to 2,452,686
_11385
Position (kb)
2450
2451 Strain fitness (log2 ratio)
-2
-1
0
1 at 2449.390 kb on - strand, within PS417_11365 at 2449.395 kb on + strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.470 kb on + strand at 2449.546 kb on - strand at 2449.546 kb on - strand at 2450.130 kb on - strand, within PS417_11370 at 2450.248 kb on - strand at 2450.438 kb on + strand, within PS417_11375 at 2450.438 kb on + strand, within PS417_11375 at 2450.439 kb on - strand, within PS417_11375 at 2451.097 kb on + strand, within PS417_11380 at 2451.098 kb on - strand, within PS417_11380 at 2451.098 kb on - strand, within PS417_11380 at 2451.200 kb on - strand, within PS417_11380
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 0.5 mM; solid stress remove 2,449,390 - PS417_11365 0.88 -1.9 2,449,395 + PS417_11365 0.88 -0.5 2,449,396 - PS417_11365 0.88 -0.2 2,449,396 - PS417_11365 0.88 +0.9 2,449,396 - PS417_11365 0.88 -0.2 2,449,396 - PS417_11365 0.88 -0.5 2,449,470 + +0.6 2,449,546 - +0.0 2,449,546 - +0.2 2,450,130 - PS417_11370 0.81 -0.7 2,450,248 - -0.1 2,450,438 + PS417_11375 0.39 -0.1 2,450,438 + PS417_11375 0.39 -0.7 2,450,439 - PS417_11375 0.39 -1.8 2,451,097 + PS417_11380 0.40 +0.8 2,451,098 - PS417_11380 0.41 +0.1 2,451,098 - PS417_11380 0.41 +0.2 2,451,200 - PS417_11380 0.51 -0.9
Or see this region's nucleotide sequence