Experiment: Scopoletin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02350 and PS417_02355 are separated by 462 nucleotides PS417_02355 and PS417_02360 are separated by 166 nucleotides
PS417_02350: PS417_02350 - channel protein TolC, at 536,476 to 537,915
_02350
PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270
_02355
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -1
0
1
2 at 537.810 kb on - strand at 537.966 kb on - strand at 538.012 kb on + strand at 538.012 kb on + strand at 538.013 kb on - strand at 538.102 kb on + strand at 538.102 kb on + strand at 538.103 kb on - strand at 538.349 kb on + strand at 538.579 kb on + strand at 538.597 kb on + strand, within PS417_02355 at 538.598 kb on - strand, within PS417_02355 at 538.667 kb on + strand, within PS417_02355 at 538.668 kb on - strand, within PS417_02355 at 538.813 kb on + strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.850 kb on - strand, within PS417_02355 at 538.926 kb on + strand, within PS417_02355 at 538.927 kb on - strand, within PS417_02355 at 539.131 kb on - strand, within PS417_02355 at 539.347 kb on + strand, within PS417_02355 at 539.347 kb on + strand at 539.348 kb on - strand, within PS417_02355 at 539.479 kb on + strand, within PS417_02355 at 539.518 kb on + strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.741 kb on - strand, within PS417_02355 at 539.912 kb on - strand, within PS417_02355 at 540.055 kb on + strand, within PS417_02355 at 540.339 kb on - strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.871 kb on - strand, within PS417_02360 at 540.871 kb on - strand, within PS417_02360 at 541.211 kb on + strand, within PS417_02360
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress remove 537,810 - -1.3 537,966 - -0.4 538,012 + -0.3 538,012 + +0.0 538,013 - -0.0 538,102 + -0.1 538,102 + -0.4 538,103 - -1.0 538,349 + -0.5 538,579 + +1.5 538,597 + PS417_02355 0.12 -0.4 538,598 - PS417_02355 0.12 -0.4 538,667 + PS417_02355 0.15 -1.1 538,668 - PS417_02355 0.15 -1.1 538,813 + PS417_02355 0.23 +0.4 538,814 - PS417_02355 0.23 -1.4 538,814 - PS417_02355 0.23 -1.1 538,814 - PS417_02355 0.23 -0.7 538,850 - PS417_02355 0.25 -0.6 538,926 + PS417_02355 0.29 -1.0 538,927 - PS417_02355 0.29 -0.5 539,131 - PS417_02355 0.40 -1.4 539,347 + PS417_02355 0.51 -0.9 539,347 + +1.8 539,348 - PS417_02355 0.51 +0.0 539,479 + PS417_02355 0.58 -0.9 539,518 + PS417_02355 0.60 -0.4 539,519 - PS417_02355 0.60 +0.5 539,519 - PS417_02355 0.60 -0.8 539,741 - PS417_02355 0.72 -0.1 539,912 - PS417_02355 0.81 -0.7 540,055 + PS417_02355 0.89 +0.5 540,339 - -0.5 540,458 + +0.1 540,459 - +1.6 540,871 - PS417_02360 0.34 -0.2 540,871 - PS417_02360 0.34 -0.4 541,211 + PS417_02360 0.60 +0.1
Or see this region's nucleotide sequence