Strain Fitness in Pseudomonas simiae WCS417 around PS417_17805

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17800 and PS417_17805 overlap by 14 nucleotidesPS417_17805 and PS417_17810 overlap by 4 nucleotides PS417_17800: PS417_17800 - microcin B17-processing protein McbD, at 3,886,035 to 3,887,228 _17800 PS417_17805: PS417_17805 - microcin B17 processing protein McbC, at 3,887,215 to 3,888,021 _17805 PS417_17810: PS417_17810 - microcin B17-processing protein McbB, at 3,888,018 to 3,888,875 _17810 Position (kb) 3887 3888 3889Strain fitness (log2 ratio) -2 -1 0 1at 3886.322 kb on - strand, within PS417_17800at 3886.460 kb on + strand, within PS417_17800at 3886.531 kb on - strand, within PS417_17800at 3886.612 kb on + strand, within PS417_17800at 3886.825 kb on + strand, within PS417_17800at 3886.826 kb on - strand, within PS417_17800at 3886.841 kb on + strandat 3886.866 kb on - strand, within PS417_17800at 3886.908 kb on - strand, within PS417_17800at 3886.910 kb on - strand, within PS417_17800at 3887.068 kb on - strand, within PS417_17800at 3887.068 kb on - strand, within PS417_17800at 3887.068 kb on - strand, within PS417_17800at 3887.100 kb on + strand, within PS417_17800at 3887.185 kb on - strandat 3887.442 kb on + strand, within PS417_17805at 3887.443 kb on - strand, within PS417_17805at 3887.445 kb on - strand, within PS417_17805at 3887.488 kb on - strandat 3887.713 kb on - strandat 3887.713 kb on - strand, within PS417_17805at 3888.048 kb on - strandat 3888.132 kb on - strand, within PS417_17810at 3888.132 kb on - strand, within PS417_17810at 3888.353 kb on + strand, within PS417_17810at 3888.355 kb on + strand, within PS417_17810at 3888.483 kb on + strand, within PS417_17810at 3888.540 kb on - strand, within PS417_17810at 3888.617 kb on + strand, within PS417_17810at 3888.869 kb on + strandat 3888.966 kb on + strandat 3888.967 kb on - strandat 3888.977 kb on + strandat 3889.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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3,886,322 - PS417_17800 0.24 -0.1
3,886,460 + PS417_17800 0.36 -0.9
3,886,531 - PS417_17800 0.42 -0.5
3,886,612 + PS417_17800 0.48 -0.3
3,886,825 + PS417_17800 0.66 -0.3
3,886,826 - PS417_17800 0.66 +0.2
3,886,841 + +0.9
3,886,866 - PS417_17800 0.70 -0.0
3,886,908 - PS417_17800 0.73 +0.1
3,886,910 - PS417_17800 0.73 +0.2
3,887,068 - PS417_17800 0.87 +0.6
3,887,068 - PS417_17800 0.87 +1.1
3,887,068 - PS417_17800 0.87 +0.3
3,887,100 + PS417_17800 0.89 +1.3
3,887,185 - -0.4
3,887,442 + PS417_17805 0.28 -0.5
3,887,443 - PS417_17805 0.28 -1.3
3,887,445 - PS417_17805 0.29 -1.7
3,887,488 - +1.3
3,887,713 - +0.3
3,887,713 - PS417_17805 0.62 -0.5
3,888,048 - -0.0
3,888,132 - PS417_17810 0.13 -0.1
3,888,132 - PS417_17810 0.13 +0.2
3,888,353 + PS417_17810 0.39 -1.4
3,888,355 + PS417_17810 0.39 +0.2
3,888,483 + PS417_17810 0.54 +0.0
3,888,540 - PS417_17810 0.61 -0.5
3,888,617 + PS417_17810 0.70 -1.2
3,888,869 + -0.1
3,888,966 + -0.1
3,888,967 - -0.5
3,888,977 + -0.1
3,889,002 - -1.8

Or see this region's nucleotide sequence