Strain Fitness in Pseudomonas simiae WCS417 around PS417_04985

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04975 and PS417_04980 are separated by 181 nucleotidesPS417_04980 and PS417_04985 are separated by 104 nucleotidesPS417_04985 and PS417_04990 are separated by 36 nucleotidesPS417_04990 and PS417_04995 are separated by 75 nucleotides PS417_04975: PS417_04975 - response regulator receiver protein, at 1,106,992 to 1,107,819 _04975 PS417_04980: PS417_04980 - response regulator receiver protein, at 1,108,001 to 1,108,636 _04980 PS417_04985: PS417_04985 - ketosteroid isomerase, at 1,108,741 to 1,109,211 _04985 PS417_04990: PS417_04990 - GIY-YIG nuclease, at 1,109,248 to 1,109,523 _04990 PS417_04995: PS417_04995 - glutathione S-transferase, at 1,109,599 to 1,110,534 _04995 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -1 0 1 2 3at 1107.793 kb on + strandat 1107.793 kb on + strandat 1107.793 kb on + strandat 1107.842 kb on + strandat 1107.843 kb on - strandat 1107.843 kb on - strandat 1107.860 kb on + strandat 1107.861 kb on - strandat 1107.861 kb on - strandat 1107.962 kb on + strandat 1107.963 kb on - strandat 1108.012 kb on - strandat 1108.016 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.199 kb on - strand, within PS417_04980at 1108.199 kb on - strandat 1108.199 kb on - strand, within PS417_04980at 1108.251 kb on + strand, within PS417_04980at 1108.252 kb on - strand, within PS417_04980at 1108.701 kb on + strandat 1108.822 kb on + strand, within PS417_04985at 1108.822 kb on + strand, within PS417_04985at 1108.822 kb on + strand, within PS417_04985at 1108.823 kb on - strand, within PS417_04985at 1108.887 kb on + strand, within PS417_04985at 1108.887 kb on + strand, within PS417_04985at 1108.988 kb on - strand, within PS417_04985at 1108.988 kb on - strand, within PS417_04985at 1109.219 kb on - strandat 1109.314 kb on + strand, within PS417_04990at 1109.314 kb on + strand, within PS417_04990at 1109.413 kb on + strand, within PS417_04990at 1109.413 kb on + strand, within PS417_04990at 1109.697 kb on + strand, within PS417_04995at 1109.697 kb on + strand, within PS417_04995at 1109.698 kb on - strand, within PS417_04995at 1109.698 kb on - strand, within PS417_04995at 1109.698 kb on - strand, within PS417_04995at 1109.698 kb on - strand, within PS417_04995at 1109.781 kb on + strand, within PS417_04995at 1109.782 kb on - strand, within PS417_04995at 1109.785 kb on + strand, within PS417_04995at 1109.785 kb on + strand, within PS417_04995at 1109.785 kb on + strand, within PS417_04995at 1109.785 kb on + strand, within PS417_04995at 1109.785 kb on + strand, within PS417_04995at 1109.786 kb on - strand, within PS417_04995at 1109.786 kb on - strand, within PS417_04995

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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1,107,793 + -0.3
1,107,793 + +0.9
1,107,793 + +0.1
1,107,842 + -0.2
1,107,843 - +0.0
1,107,843 - +0.1
1,107,860 + +0.7
1,107,861 - +2.0
1,107,861 - -0.6
1,107,962 + +0.1
1,107,963 - -0.5
1,108,012 - -0.6
1,108,016 - +0.0
1,108,063 - -1.5
1,108,063 - -0.6
1,108,063 - -0.0
1,108,063 - +0.8
1,108,198 + PS417_04980 0.31 +1.5
1,108,198 + PS417_04980 0.31 +0.1
1,108,198 + PS417_04980 0.31 -1.4
1,108,198 + PS417_04980 0.31 -0.3
1,108,199 - PS417_04980 0.31 +0.9
1,108,199 - +1.2
1,108,199 - PS417_04980 0.31 -0.5
1,108,251 + PS417_04980 0.39 -0.0
1,108,252 - PS417_04980 0.39 +0.3
1,108,701 + +0.9
1,108,822 + PS417_04985 0.17 +0.6
1,108,822 + PS417_04985 0.17 +0.1
1,108,822 + PS417_04985 0.17 +0.5
1,108,823 - PS417_04985 0.17 +0.5
1,108,887 + PS417_04985 0.31 +0.2
1,108,887 + PS417_04985 0.31 +3.1
1,108,988 - PS417_04985 0.52 -0.1
1,108,988 - PS417_04985 0.52 -0.2
1,109,219 - +0.5
1,109,314 + PS417_04990 0.24 +0.7
1,109,314 + PS417_04990 0.24 +0.1
1,109,413 + PS417_04990 0.60 +0.2
1,109,413 + PS417_04990 0.60 -0.1
1,109,697 + PS417_04995 0.10 +0.4
1,109,697 + PS417_04995 0.10 +0.4
1,109,698 - PS417_04995 0.11 -0.6
1,109,698 - PS417_04995 0.11 -0.6
1,109,698 - PS417_04995 0.11 -0.4
1,109,698 - PS417_04995 0.11 +0.4
1,109,781 + PS417_04995 0.19 +1.1
1,109,782 - PS417_04995 0.20 +0.6
1,109,785 + PS417_04995 0.20 -1.7
1,109,785 + PS417_04995 0.20 +0.8
1,109,785 + PS417_04995 0.20 -0.4
1,109,785 + PS417_04995 0.20 -0.1
1,109,785 + PS417_04995 0.20 -0.2
1,109,786 - PS417_04995 0.20 +0.3
1,109,786 - PS417_04995 0.20 -1.6

Or see this region's nucleotide sequence