Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27660 and PS417_27665 are separated by 66 nucleotides PS417_27665 and PS417_27670 are separated by 255 nucleotides
PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201
_27660
PS417_27665: PS417_27665 - diguanylate cyclase, at 5,966,268 to 5,967,932
_27665
PS417_27670: PS417_27670 - ATP-dependent DNA helicase Rep, at 5,968,188 to 5,970,197
_27670
Position (kb)
5966
5967
5968 Strain fitness (log2 ratio)
-1
0
1 at 5965.317 kb on + strand, within PS417_27660 at 5965.317 kb on + strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.434 kb on + strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.456 kb on - strand at 5965.456 kb on - strand, within PS417_27660 at 5965.503 kb on + strand, within PS417_27660 at 5965.548 kb on + strand, within PS417_27660 at 5966.002 kb on - strand at 5966.169 kb on + strand at 5966.170 kb on - strand at 5966.208 kb on + strand at 5966.308 kb on + strand at 5966.309 kb on - strand at 5967.642 kb on + strand, within PS417_27665 at 5967.643 kb on - strand, within PS417_27665 at 5967.643 kb on - strand, within PS417_27665 at 5967.643 kb on - strand, within PS417_27665 at 5967.643 kb on - strand, within PS417_27665 at 5967.643 kb on - strand, within PS417_27665 at 5967.709 kb on - strand, within PS417_27665 at 5967.935 kb on + strand at 5967.935 kb on + strand at 5967.936 kb on - strand at 5967.936 kb on - strand at 5967.943 kb on + strand at 5967.976 kb on - strand at 5968.047 kb on + strand at 5968.090 kb on - strand at 5968.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 5,965,317 + PS417_27660 0.37 -0.4 5,965,317 + PS417_27660 0.37 +0.1 5,965,318 - PS417_27660 0.37 -0.2 5,965,318 - PS417_27660 0.37 -0.1 5,965,318 - PS417_27660 0.37 +0.8 5,965,434 + PS417_27660 0.45 +0.2 5,965,452 - PS417_27660 0.47 +0.2 5,965,452 - PS417_27660 0.47 +0.8 5,965,452 - PS417_27660 0.47 -0.0 5,965,456 - +0.7 5,965,456 - PS417_27660 0.47 -0.0 5,965,503 + PS417_27660 0.50 +0.0 5,965,548 + PS417_27660 0.53 +0.3 5,966,002 - -0.3 5,966,169 + +0.4 5,966,170 - +0.5 5,966,208 + -0.8 5,966,308 + -0.2 5,966,309 - +0.0 5,967,642 + PS417_27665 0.83 -0.7 5,967,643 - PS417_27665 0.83 -0.2 5,967,643 - PS417_27665 0.83 -0.2 5,967,643 - PS417_27665 0.83 -0.5 5,967,643 - PS417_27665 0.83 -0.9 5,967,643 - PS417_27665 0.83 -0.4 5,967,709 - PS417_27665 0.87 -1.0 5,967,935 + -0.6 5,967,935 + +0.7 5,967,936 - -0.4 5,967,936 - -0.2 5,967,943 + -0.6 5,967,976 - +0.8 5,968,047 + +0.1 5,968,090 - -0.3 5,968,102 - +0.4
Or see this region's nucleotide sequence