Strain Fitness in Pseudomonas simiae WCS417 around PS417_24605

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24600 and PS417_24605 are separated by 18 nucleotidesPS417_24605 and PS417_24610 are separated by 17 nucleotides PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999 _24600 PS417_24605: PS417_24605 - thiamine-phosphate pyrophosphorylase, at 5,340,018 to 5,340,641 _24605 PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942 _24610 Position (kb) 5340 5341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5339.023 kb on + strandat 5339.023 kb on + strandat 5339.023 kb on + strandat 5339.024 kb on - strandat 5339.029 kb on - strandat 5339.029 kb on - strandat 5339.029 kb on - strandat 5339.078 kb on + strandat 5339.207 kb on + strandat 5339.208 kb on - strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.374 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.820 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.914 kb on - strand, within PS417_24600at 5340.003 kb on + strandat 5340.003 kb on + strandat 5340.081 kb on + strand, within PS417_24605at 5340.197 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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5,339,023 + -0.9
5,339,023 + +0.2
5,339,023 + +0.0
5,339,024 - +0.0
5,339,029 - +0.7
5,339,029 - +0.4
5,339,029 - +0.1
5,339,078 + +0.0
5,339,207 + -0.2
5,339,208 - -2.0
5,339,211 + -1.5
5,339,211 + -0.7
5,339,211 + +0.3
5,339,211 + -0.7
5,339,212 - +0.7
5,339,212 - -0.8
5,339,212 - +0.2
5,339,212 - +2.7
5,339,374 + PS417_24600 0.22 -1.0
5,339,703 + PS417_24600 0.63 -1.4
5,339,703 + PS417_24600 0.63 -1.3
5,339,703 + PS417_24600 0.63 -1.2
5,339,820 + PS417_24600 0.77 -0.5
5,339,913 + PS417_24600 0.89 -3.1
5,339,913 + PS417_24600 0.89 -0.2
5,339,913 + PS417_24600 0.89 +0.3
5,339,914 - PS417_24600 0.89 +0.2
5,340,003 + +1.7
5,340,003 + +0.1
5,340,081 + PS417_24605 0.10 -0.9
5,340,197 + PS417_24605 0.29 -1.0
5,340,384 + PS417_24605 0.59 -0.6
5,340,384 + PS417_24605 0.59 -0.1
5,340,384 + PS417_24605 0.59 -1.8

Or see this region's nucleotide sequence