Strain Fitness in Pseudomonas simiae WCS417 around PS417_22205

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22200 and PS417_22205 are separated by 155 nucleotidesPS417_22205 and PS417_22210 overlap by 44 nucleotides PS417_22200: PS417_22200 - hypothetical protein, at 4,809,252 to 4,813,466 _22200 PS417_22205: PS417_22205 - potassium transporter TrkH, at 4,813,622 to 4,815,076 _22205 PS417_22210: PS417_22210 - AraC family transcriptional regulator, at 4,815,033 to 4,816,091 _22210 Position (kb) 4813 4814 4815 4816Strain fitness (log2 ratio) -1 0 1at 4812.771 kb on + strand, within PS417_22200at 4812.779 kb on - strand, within PS417_22200at 4813.007 kb on - strand, within PS417_22200at 4813.491 kb on - strandat 4813.530 kb on + strandat 4813.530 kb on + strandat 4813.535 kb on - strandat 4813.535 kb on - strandat 4813.566 kb on + strandat 4813.566 kb on + strandat 4813.567 kb on - strandat 4813.642 kb on + strandat 4813.643 kb on - strandat 4813.841 kb on + strand, within PS417_22205at 4813.841 kb on + strand, within PS417_22205at 4813.841 kb on + strand, within PS417_22205at 4813.842 kb on - strand, within PS417_22205at 4813.876 kb on + strand, within PS417_22205at 4813.877 kb on - strand, within PS417_22205at 4813.877 kb on - strand, within PS417_22205at 4813.919 kb on + strand, within PS417_22205at 4813.919 kb on + strand, within PS417_22205at 4813.920 kb on - strand, within PS417_22205at 4813.969 kb on + strand, within PS417_22205at 4814.387 kb on + strand, within PS417_22205at 4814.388 kb on - strand, within PS417_22205at 4814.591 kb on + strand, within PS417_22205at 4814.703 kb on - strand, within PS417_22205at 4814.703 kb on - strand, within PS417_22205at 4814.703 kb on - strand, within PS417_22205at 4814.703 kb on - strand, within PS417_22205at 4814.703 kb on - strand, within PS417_22205at 4815.425 kb on - strand, within PS417_22210at 4815.425 kb on - strand, within PS417_22210at 4815.521 kb on - strand, within PS417_22210at 4815.709 kb on - strand, within PS417_22210at 4815.728 kb on - strand, within PS417_22210

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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4,812,771 + PS417_22200 0.83 +1.0
4,812,779 - PS417_22200 0.84 +0.1
4,813,007 - PS417_22200 0.89 +0.0
4,813,491 - +1.1
4,813,530 + -0.1
4,813,530 + -0.5
4,813,535 - -0.7
4,813,535 - -0.1
4,813,566 + -0.2
4,813,566 + -0.4
4,813,567 - -0.5
4,813,642 + +1.1
4,813,643 - +0.1
4,813,841 + PS417_22205 0.15 -0.5
4,813,841 + PS417_22205 0.15 -1.1
4,813,841 + PS417_22205 0.15 -1.6
4,813,842 - PS417_22205 0.15 -0.2
4,813,876 + PS417_22205 0.17 +0.9
4,813,877 - PS417_22205 0.18 -0.6
4,813,877 - PS417_22205 0.18 +0.6
4,813,919 + PS417_22205 0.20 -0.7
4,813,919 + PS417_22205 0.20 -0.6
4,813,920 - PS417_22205 0.20 -0.2
4,813,969 + PS417_22205 0.24 -0.1
4,814,387 + PS417_22205 0.53 +0.5
4,814,388 - PS417_22205 0.53 -1.4
4,814,591 + PS417_22205 0.67 -1.6
4,814,703 - PS417_22205 0.74 -1.2
4,814,703 - PS417_22205 0.74 -0.9
4,814,703 - PS417_22205 0.74 -0.8
4,814,703 - PS417_22205 0.74 -0.2
4,814,703 - PS417_22205 0.74 -1.0
4,815,425 - PS417_22210 0.37 +0.1
4,815,425 - PS417_22210 0.37 +1.3
4,815,521 - PS417_22210 0.46 +1.0
4,815,709 - PS417_22210 0.64 +0.5
4,815,728 - PS417_22210 0.66 +0.0

Or see this region's nucleotide sequence