Strain Fitness in Pseudomonas simiae WCS417 around PS417_21090

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21080 and PS417_21085 overlap by 1 nucleotidesPS417_21085 and PS417_21090 are separated by 272 nucleotidesPS417_21090 and PS417_21095 are separated by 5 nucleotides PS417_21080: PS417_21080 - 2-methylisocitrate lyase, at 4,588,596 to 4,589,489 _21080 PS417_21085: PS417_21085 - GntR family transcriptional regulator, at 4,589,489 to 4,590,199 _21085 PS417_21090: PS417_21090 - hypothetical protein, at 4,590,472 to 4,591,008 _21090 PS417_21095: PS417_21095 - membrane protein, at 4,591,014 to 4,592,546 _21095 Position (kb) 4590 4591 4592Strain fitness (log2 ratio) -1 0 1at 4589.729 kb on - strand, within PS417_21085at 4589.729 kb on - strand, within PS417_21085at 4589.729 kb on - strand, within PS417_21085at 4589.788 kb on - strand, within PS417_21085at 4589.926 kb on - strand, within PS417_21085at 4590.052 kb on - strand, within PS417_21085at 4590.358 kb on + strandat 4590.422 kb on + strandat 4590.423 kb on - strandat 4590.471 kb on + strandat 4590.471 kb on + strandat 4590.494 kb on + strandat 4590.551 kb on - strand, within PS417_21090at 4590.566 kb on - strand, within PS417_21090at 4590.800 kb on - strand, within PS417_21090at 4591.071 kb on - strandat 4591.071 kb on - strandat 4591.264 kb on - strand, within PS417_21095at 4591.344 kb on + strand, within PS417_21095at 4591.345 kb on - strand, within PS417_21095at 4591.345 kb on - strand, within PS417_21095at 4591.345 kb on - strand, within PS417_21095at 4591.345 kb on - strandat 4591.347 kb on + strand, within PS417_21095at 4591.722 kb on + strand, within PS417_21095at 4591.923 kb on + strand, within PS417_21095at 4591.961 kb on + strand, within PS417_21095at 4591.961 kb on + strand, within PS417_21095at 4591.961 kb on + strand, within PS417_21095

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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4,589,729 - PS417_21085 0.34 -0.1
4,589,729 - PS417_21085 0.34 +1.1
4,589,729 - PS417_21085 0.34 +0.2
4,589,788 - PS417_21085 0.42 +0.0
4,589,926 - PS417_21085 0.61 -0.7
4,590,052 - PS417_21085 0.79 -0.9
4,590,358 + -0.3
4,590,422 + -1.4
4,590,423 - -1.7
4,590,471 + +0.4
4,590,471 + -0.9
4,590,494 + -0.2
4,590,551 - PS417_21090 0.15 -1.4
4,590,566 - PS417_21090 0.18 -0.2
4,590,800 - PS417_21090 0.61 -1.3
4,591,071 - -0.2
4,591,071 - -0.1
4,591,264 - PS417_21095 0.16 -1.3
4,591,344 + PS417_21095 0.22 -0.2
4,591,345 - PS417_21095 0.22 -0.7
4,591,345 - PS417_21095 0.22 -0.6
4,591,345 - PS417_21095 0.22 -0.1
4,591,345 - -0.4
4,591,347 + PS417_21095 0.22 -0.3
4,591,722 + PS417_21095 0.46 -0.3
4,591,923 + PS417_21095 0.59 -0.4
4,591,961 + PS417_21095 0.62 +0.0
4,591,961 + PS417_21095 0.62 +0.0
4,591,961 + PS417_21095 0.62 -0.9

Or see this region's nucleotide sequence