Strain Fitness in Pseudomonas simiae WCS417 around PS417_19650

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19635 and PS417_19645 are separated by 565 nucleotidesPS417_19645 and PS417_19650 are separated by 0 nucleotidesPS417_19650 and PS417_19655 are separated by 81 nucleotidesPS417_19655 and PS417_19660 overlap by 1 nucleotides PS417_19635: PS417_19635 - lipid kinase, at 4,269,758 to 4,270,678 _19635 PS417_19645: PS417_19645 - chemotaxis protein, at 4,271,244 to 4,271,636 _19645 PS417_19650: PS417_19650 - chemotaxis protein CheW, at 4,271,637 to 4,272,119 _19650 PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989 _19655 PS417_19660: PS417_19660 - cobalamin biosynthesis protein CobQ, at 4,272,989 to 4,273,777 _19660 Position (kb) 4271 4272 4273Strain fitness (log2 ratio) -2 -1 0 1at 4270.688 kb on - strandat 4270.775 kb on + strandat 4270.775 kb on + strandat 4270.775 kb on + strandat 4270.805 kb on + strandat 4270.806 kb on - strandat 4270.851 kb on + strandat 4270.924 kb on + strandat 4270.925 kb on - strandat 4270.928 kb on + strandat 4270.929 kb on - strandat 4270.929 kb on - strandat 4270.929 kb on - strandat 4270.935 kb on + strandat 4270.937 kb on + strandat 4270.937 kb on + strandat 4270.937 kb on + strandat 4270.938 kb on - strandat 4270.946 kb on + strandat 4270.947 kb on - strandat 4270.997 kb on + strandat 4270.998 kb on - strandat 4271.107 kb on - strandat 4271.227 kb on - strandat 4271.234 kb on - strandat 4271.234 kb on - strandat 4271.237 kb on + strandat 4271.237 kb on + strandat 4271.237 kb on + strandat 4271.253 kb on - strandat 4271.566 kb on + strand, within PS417_19645at 4271.566 kb on + strand, within PS417_19645at 4271.566 kb on + strand, within PS417_19645at 4271.965 kb on + strand, within PS417_19650at 4271.965 kb on + strand, within PS417_19650at 4271.966 kb on - strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.066 kb on - strand, within PS417_19650at 4272.120 kb on - strandat 4272.146 kb on + strandat 4272.147 kb on - strandat 4272.159 kb on + strandat 4272.159 kb on + strandat 4272.160 kb on - strandat 4272.166 kb on - strandat 4272.287 kb on + strand, within PS417_19655at 4272.287 kb on + strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.583 kb on + strand, within PS417_19655at 4273.052 kb on + strandat 4273.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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4,270,688 - -1.5
4,270,775 + -0.2
4,270,775 + +0.2
4,270,775 + -0.6
4,270,805 + -0.2
4,270,806 - +0.0
4,270,851 + +0.0
4,270,924 + +0.1
4,270,925 - -0.3
4,270,928 + -1.6
4,270,929 - -0.1
4,270,929 - -0.6
4,270,929 - +0.3
4,270,935 + -0.4
4,270,937 + +0.2
4,270,937 + +0.0
4,270,937 + +0.8
4,270,938 - +0.8
4,270,946 + -0.4
4,270,947 - -0.3
4,270,997 + +0.0
4,270,998 - -0.1
4,271,107 - +0.2
4,271,227 - -0.3
4,271,234 - -0.0
4,271,234 - +0.1
4,271,237 + -0.0
4,271,237 + -0.4
4,271,237 + -0.0
4,271,253 - -0.2
4,271,566 + PS417_19645 0.82 -0.5
4,271,566 + PS417_19645 0.82 -0.4
4,271,566 + PS417_19645 0.82 -0.9
4,271,965 + PS417_19650 0.68 -0.5
4,271,965 + PS417_19650 0.68 -1.8
4,271,966 - PS417_19650 0.68 -0.8
4,272,040 + PS417_19650 0.83 +0.6
4,272,040 + PS417_19650 0.83 +1.1
4,272,040 + PS417_19650 0.83 -0.9
4,272,066 - PS417_19650 0.89 -0.7
4,272,120 - -1.0
4,272,146 + -0.3
4,272,147 - +1.4
4,272,159 + -0.9
4,272,159 + -0.0
4,272,160 - +0.0
4,272,166 - +0.5
4,272,287 + PS417_19655 0.11 -0.8
4,272,287 + PS417_19655 0.11 +0.5
4,272,288 - PS417_19655 0.11 +1.0
4,272,288 - PS417_19655 0.11 +0.9
4,272,288 - PS417_19655 0.11 +0.4
4,272,583 + PS417_19655 0.48 -0.3
4,273,052 + +1.7
4,273,052 + +0.0

Or see this region's nucleotide sequence