Strain Fitness in Pseudomonas simiae WCS417 around PS417_18740

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18730 and PS417_18735 overlap by 4 nucleotidesPS417_18735 and PS417_18740 are separated by 21 nucleotidesPS417_18740 and PS417_18745 overlap by 4 nucleotidesPS417_18745 and PS417_18750 are separated by 50 nucleotides PS417_18730: PS417_18730 - ABC transporter permease, at 4,065,857 to 4,066,861 _18730 PS417_18735: PS417_18735 - histidinol phosphatase, at 4,066,858 to 4,067,622 _18735 PS417_18740: PS417_18740 - acetyltransferase, at 4,067,644 to 4,068,141 _18740 PS417_18745: PS417_18745 - hypothetical protein, at 4,068,138 to 4,068,362 _18745 PS417_18750: PS417_18750 - esterase, at 4,068,413 to 4,069,339 _18750 Position (kb) 4067 4068 4069Strain fitness (log2 ratio) -1 0 1at 4066.650 kb on + strand, within PS417_18730at 4066.749 kb on + strand, within PS417_18730at 4066.750 kb on - strand, within PS417_18730at 4066.866 kb on - strandat 4067.509 kb on - strand, within PS417_18735at 4067.569 kb on + strandat 4067.570 kb on - strandat 4067.570 kb on - strandat 4067.662 kb on - strandat 4067.765 kb on + strandat 4067.766 kb on - strand, within PS417_18740at 4067.790 kb on + strand, within PS417_18740at 4067.894 kb on + strand, within PS417_18740at 4068.100 kb on - strandat 4068.123 kb on + strandat 4068.340 kb on + strandat 4068.341 kb on - strandat 4068.341 kb on - strandat 4068.341 kb on - strandat 4068.341 kb on - strandat 4068.352 kb on + strandat 4068.353 kb on - strandat 4068.363 kb on - strandat 4068.414 kb on + strandat 4068.445 kb on + strandat 4068.459 kb on + strandat 4068.460 kb on - strandat 4068.499 kb on + strandat 4068.500 kb on - strandat 4068.636 kb on + strand, within PS417_18750at 4068.731 kb on + strand, within PS417_18750at 4068.731 kb on + strand, within PS417_18750at 4068.790 kb on - strand, within PS417_18750at 4068.792 kb on + strand, within PS417_18750at 4068.793 kb on - strand, within PS417_18750at 4068.793 kb on - strand, within PS417_18750at 4068.793 kb on - strand, within PS417_18750at 4068.793 kb on - strand, within PS417_18750at 4068.793 kb on - strand, within PS417_18750

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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4,066,650 + PS417_18730 0.79 -0.1
4,066,749 + PS417_18730 0.89 +0.5
4,066,750 - PS417_18730 0.89 -0.2
4,066,866 - -0.3
4,067,509 - PS417_18735 0.85 -1.1
4,067,569 + -0.1
4,067,570 - +0.0
4,067,570 - -0.2
4,067,662 - -0.5
4,067,765 + +0.4
4,067,766 - PS417_18740 0.24 -0.4
4,067,790 + PS417_18740 0.29 -1.1
4,067,894 + PS417_18740 0.50 -0.7
4,068,100 - -0.2
4,068,123 + -0.2
4,068,340 + +0.0
4,068,341 - -0.1
4,068,341 - +0.2
4,068,341 - +0.1
4,068,341 - -0.4
4,068,352 + -0.1
4,068,353 - -0.0
4,068,363 - -0.4
4,068,414 + +0.1
4,068,445 + -0.2
4,068,459 + +0.2
4,068,460 - -0.4
4,068,499 + +0.1
4,068,500 - -0.2
4,068,636 + PS417_18750 0.24 +0.1
4,068,731 + PS417_18750 0.34 +0.1
4,068,731 + PS417_18750 0.34 -0.1
4,068,790 - PS417_18750 0.41 +0.5
4,068,792 + PS417_18750 0.41 -1.3
4,068,793 - PS417_18750 0.41 -0.1
4,068,793 - PS417_18750 0.41 -0.3
4,068,793 - PS417_18750 0.41 -0.1
4,068,793 - PS417_18750 0.41 -0.2
4,068,793 - PS417_18750 0.41 +1.3

Or see this region's nucleotide sequence