Strain Fitness in Pseudomonas simiae WCS417 around PS417_17505

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17495 and PS417_17500 are separated by 108 nucleotidesPS417_17500 and PS417_17505 are separated by 15 nucleotidesPS417_17505 and PS417_17510 are separated by 146 nucleotides PS417_17495: PS417_17495 - multidrug ABC transporter permease, at 3,821,731 to 3,822,522 _17495 PS417_17500: PS417_17500 - sulfurtransferase, at 3,822,631 to 3,823,179 _17500 PS417_17505: PS417_17505 - LuxR family transcriptional regulator, at 3,823,195 to 3,823,860 _17505 PS417_17510: PS417_17510 - histidine kinase, at 3,824,007 to 3,825,908 _17510 Position (kb) 3823 3824Strain fitness (log2 ratio) -1 0 1 2at 3822.407 kb on - strand, within PS417_17495at 3822.540 kb on - strandat 3822.598 kb on + strandat 3822.959 kb on - strand, within PS417_17500at 3822.976 kb on + strand, within PS417_17500at 3822.982 kb on + strand, within PS417_17500at 3822.982 kb on + strand, within PS417_17500at 3822.983 kb on - strand, within PS417_17500at 3823.018 kb on + strand, within PS417_17500at 3823.080 kb on + strand, within PS417_17500at 3823.080 kb on + strand, within PS417_17500at 3823.081 kb on - strand, within PS417_17500at 3823.090 kb on + strand, within PS417_17500at 3823.177 kb on + strandat 3823.199 kb on - strandat 3823.422 kb on + strand, within PS417_17505at 3823.484 kb on - strand, within PS417_17505at 3823.484 kb on - strand, within PS417_17505at 3823.567 kb on + strand, within PS417_17505at 3823.754 kb on + strand, within PS417_17505at 3823.847 kb on - strandat 3823.847 kb on - strandat 3823.847 kb on - strandat 3823.929 kb on - strandat 3824.245 kb on + strand, within PS417_17510at 3824.245 kb on + strand, within PS417_17510at 3824.245 kb on + strand, within PS417_17510at 3824.246 kb on - strand, within PS417_17510at 3824.246 kb on - strand, within PS417_17510at 3824.250 kb on - strand, within PS417_17510at 3824.499 kb on - strand, within PS417_17510at 3824.707 kb on + strand, within PS417_17510at 3824.708 kb on - strand, within PS417_17510

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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3,822,407 - PS417_17495 0.85 -0.2
3,822,540 - +1.3
3,822,598 + -0.3
3,822,959 - PS417_17500 0.60 -0.2
3,822,976 + PS417_17500 0.63 -0.2
3,822,982 + PS417_17500 0.64 -0.3
3,822,982 + PS417_17500 0.64 +0.4
3,822,983 - PS417_17500 0.64 +0.1
3,823,018 + PS417_17500 0.70 +0.6
3,823,080 + PS417_17500 0.82 -0.1
3,823,080 + PS417_17500 0.82 +0.4
3,823,081 - PS417_17500 0.82 -0.3
3,823,090 + PS417_17500 0.84 +0.1
3,823,177 + +2.0
3,823,199 - -0.0
3,823,422 + PS417_17505 0.34 +0.1
3,823,484 - PS417_17505 0.43 -0.4
3,823,484 - PS417_17505 0.43 -1.1
3,823,567 + PS417_17505 0.56 -0.8
3,823,754 + PS417_17505 0.84 +0.1
3,823,847 - -0.2
3,823,847 - -0.1
3,823,847 - -0.1
3,823,929 - -0.2
3,824,245 + PS417_17510 0.13 -0.1
3,824,245 + PS417_17510 0.13 -0.7
3,824,245 + PS417_17510 0.13 +0.4
3,824,246 - PS417_17510 0.13 +0.5
3,824,246 - PS417_17510 0.13 -0.6
3,824,250 - PS417_17510 0.13 -0.2
3,824,499 - PS417_17510 0.26 +0.2
3,824,707 + PS417_17510 0.37 -0.2
3,824,708 - PS417_17510 0.37 -1.2

Or see this region's nucleotide sequence