Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16555 and PS417_16560 overlap by 8 nucleotides PS417_16560 and PS417_16565 are separated by 231 nucleotides
PS417_16555: PS417_16555 - cupin, at 3,617,592 to 3,618,758
_16555
PS417_16560: PS417_16560 - GNAT family acetyltransferase, at 3,618,751 to 3,619,173
_16560
PS417_16565: PS417_16565 - secretin, at 3,619,405 to 3,620,142
_16565
Position (kb)
3618
3619
3620 Strain fitness (log2 ratio)
-2
-1
0
1 at 3618.159 kb on + strand, within PS417_16555 at 3618.213 kb on + strand, within PS417_16555 at 3618.304 kb on - strand, within PS417_16555 at 3618.767 kb on + strand at 3618.767 kb on + strand at 3618.768 kb on - strand at 3618.768 kb on - strand at 3618.768 kb on - strand at 3618.768 kb on - strand at 3618.768 kb on - strand at 3618.829 kb on - strand, within PS417_16560 at 3619.076 kb on - strand, within PS417_16560 at 3619.091 kb on - strand, within PS417_16560 at 3619.240 kb on + strand at 3619.240 kb on + strand at 3619.240 kb on + strand at 3619.280 kb on + strand at 3619.280 kb on + strand at 3619.281 kb on - strand at 3619.281 kb on - strand at 3619.281 kb on - strand at 3619.281 kb on - strand at 3619.281 kb on - strand at 3619.372 kb on - strand at 3619.372 kb on - strand at 3619.720 kb on + strand, within PS417_16565 at 3619.794 kb on - strand, within PS417_16565 at 3619.885 kb on + strand, within PS417_16565 at 3619.886 kb on - strand, within PS417_16565 at 3619.886 kb on - strand, within PS417_16565 at 3619.970 kb on + strand, within PS417_16565 at 3619.971 kb on - strand, within PS417_16565 at 3620.061 kb on + strand, within PS417_16565 at 3620.071 kb on - strand at 3620.071 kb on - strand at 3620.083 kb on + strand at 3620.084 kb on - strand at 3620.170 kb on - strand at 3620.172 kb on + strand at 3620.173 kb on - strand at 3620.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 3,618,159 + PS417_16555 0.49 -1.4 3,618,213 + PS417_16555 0.53 -0.9 3,618,304 - PS417_16555 0.61 -0.9 3,618,767 + +0.2 3,618,767 + -0.7 3,618,768 - -0.4 3,618,768 - +0.7 3,618,768 - -1.2 3,618,768 - +0.1 3,618,768 - -0.4 3,618,829 - PS417_16560 0.18 -0.8 3,619,076 - PS417_16560 0.77 +0.5 3,619,091 - PS417_16560 0.80 -1.7 3,619,240 + -0.2 3,619,240 + +0.1 3,619,240 + -0.1 3,619,280 + -0.1 3,619,280 + +0.2 3,619,281 - -0.2 3,619,281 - -0.4 3,619,281 - +0.1 3,619,281 - +0.1 3,619,281 - +0.4 3,619,372 - +0.2 3,619,372 - -0.9 3,619,720 + PS417_16565 0.43 -0.1 3,619,794 - PS417_16565 0.53 -0.3 3,619,885 + PS417_16565 0.65 +0.4 3,619,886 - PS417_16565 0.65 +0.1 3,619,886 - PS417_16565 0.65 +0.3 3,619,970 + PS417_16565 0.77 -0.6 3,619,971 - PS417_16565 0.77 -0.7 3,620,061 + PS417_16565 0.89 +0.8 3,620,071 - +0.5 3,620,071 - -0.2 3,620,083 + -2.3 3,620,084 - +0.1 3,620,170 - -0.1 3,620,172 + -1.8 3,620,173 - +0.1 3,620,173 - -0.2
Or see this region's nucleotide sequence