Strain Fitness in Pseudomonas simiae WCS417 around PS417_16560

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16555 and PS417_16560 overlap by 8 nucleotidesPS417_16560 and PS417_16565 are separated by 231 nucleotides PS417_16555: PS417_16555 - cupin, at 3,617,592 to 3,618,758 _16555 PS417_16560: PS417_16560 - GNAT family acetyltransferase, at 3,618,751 to 3,619,173 _16560 PS417_16565: PS417_16565 - secretin, at 3,619,405 to 3,620,142 _16565 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -2 -1 0 1at 3618.159 kb on + strand, within PS417_16555at 3618.213 kb on + strand, within PS417_16555at 3618.304 kb on - strand, within PS417_16555at 3618.767 kb on + strandat 3618.767 kb on + strandat 3618.768 kb on - strandat 3618.768 kb on - strandat 3618.768 kb on - strandat 3618.768 kb on - strandat 3618.768 kb on - strandat 3618.829 kb on - strand, within PS417_16560at 3619.076 kb on - strand, within PS417_16560at 3619.091 kb on - strand, within PS417_16560at 3619.240 kb on + strandat 3619.240 kb on + strandat 3619.240 kb on + strandat 3619.280 kb on + strandat 3619.280 kb on + strandat 3619.281 kb on - strandat 3619.281 kb on - strandat 3619.281 kb on - strandat 3619.281 kb on - strandat 3619.281 kb on - strandat 3619.372 kb on - strandat 3619.372 kb on - strandat 3619.720 kb on + strand, within PS417_16565at 3619.794 kb on - strand, within PS417_16565at 3619.885 kb on + strand, within PS417_16565at 3619.886 kb on - strand, within PS417_16565at 3619.886 kb on - strand, within PS417_16565at 3619.970 kb on + strand, within PS417_16565at 3619.971 kb on - strand, within PS417_16565at 3620.061 kb on + strand, within PS417_16565at 3620.071 kb on - strandat 3620.071 kb on - strandat 3620.083 kb on + strandat 3620.084 kb on - strandat 3620.170 kb on - strandat 3620.172 kb on + strandat 3620.173 kb on - strandat 3620.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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3,618,159 + PS417_16555 0.49 -1.4
3,618,213 + PS417_16555 0.53 -0.9
3,618,304 - PS417_16555 0.61 -0.9
3,618,767 + +0.2
3,618,767 + -0.7
3,618,768 - -0.4
3,618,768 - +0.7
3,618,768 - -1.2
3,618,768 - +0.1
3,618,768 - -0.4
3,618,829 - PS417_16560 0.18 -0.8
3,619,076 - PS417_16560 0.77 +0.5
3,619,091 - PS417_16560 0.80 -1.7
3,619,240 + -0.2
3,619,240 + +0.1
3,619,240 + -0.1
3,619,280 + -0.1
3,619,280 + +0.2
3,619,281 - -0.2
3,619,281 - -0.4
3,619,281 - +0.1
3,619,281 - +0.1
3,619,281 - +0.4
3,619,372 - +0.2
3,619,372 - -0.9
3,619,720 + PS417_16565 0.43 -0.1
3,619,794 - PS417_16565 0.53 -0.3
3,619,885 + PS417_16565 0.65 +0.4
3,619,886 - PS417_16565 0.65 +0.1
3,619,886 - PS417_16565 0.65 +0.3
3,619,970 + PS417_16565 0.77 -0.6
3,619,971 - PS417_16565 0.77 -0.7
3,620,061 + PS417_16565 0.89 +0.8
3,620,071 - +0.5
3,620,071 - -0.2
3,620,083 + -2.3
3,620,084 - +0.1
3,620,170 - -0.1
3,620,172 + -1.8
3,620,173 - +0.1
3,620,173 - -0.2

Or see this region's nucleotide sequence