Strain Fitness in Pseudomonas simiae WCS417 around PS417_14850

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14840 and PS417_14845 are separated by 7 nucleotidesPS417_14845 and PS417_14850 overlap by 4 nucleotidesPS417_14850 and PS417_14855 are separated by 96 nucleotides PS417_14840: PS417_14840 - abortive phage infection protein, at 3,243,937 to 3,244,674 _14840 PS417_14845: PS417_14845 - endoribonuclease L-PSP, at 3,244,682 to 3,245,152 _14845 PS417_14850: PS417_14850 - hypothetical protein, at 3,245,149 to 3,245,367 _14850 PS417_14855: PS417_14855 - gluconolactonase, at 3,245,464 to 3,246,561 _14855 Position (kb) 3245 3246Strain fitness (log2 ratio) -1 0 1at 3244.170 kb on - strand, within PS417_14840at 3244.221 kb on - strandat 3244.374 kb on + strand, within PS417_14840at 3244.375 kb on - strand, within PS417_14840at 3244.632 kb on - strandat 3244.632 kb on - strandat 3244.632 kb on - strandat 3244.641 kb on - strandat 3244.756 kb on + strand, within PS417_14845at 3244.757 kb on - strand, within PS417_14845at 3245.040 kb on + strand, within PS417_14845at 3245.040 kb on + strand, within PS417_14845at 3245.040 kb on + strandat 3245.041 kb on - strand, within PS417_14845at 3245.074 kb on - strand, within PS417_14845at 3245.074 kb on - strand, within PS417_14845at 3245.134 kb on - strandat 3245.236 kb on - strand, within PS417_14850at 3245.291 kb on - strand, within PS417_14850at 3245.465 kb on + strandat 3245.465 kb on + strandat 3245.490 kb on + strandat 3245.733 kb on - strand, within PS417_14855at 3245.837 kb on + strand, within PS417_14855at 3245.934 kb on - strand, within PS417_14855at 3245.975 kb on + strandat 3245.976 kb on - strand, within PS417_14855at 3246.090 kb on + strandat 3246.090 kb on + strand, within PS417_14855at 3246.091 kb on - strand, within PS417_14855

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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3,244,170 - PS417_14840 0.32 -0.1
3,244,221 - +0.7
3,244,374 + PS417_14840 0.59 -0.1
3,244,375 - PS417_14840 0.59 -0.2
3,244,632 - -0.3
3,244,632 - +0.1
3,244,632 - -0.1
3,244,641 - -0.1
3,244,756 + PS417_14845 0.16 -0.9
3,244,757 - PS417_14845 0.16 +0.1
3,245,040 + PS417_14845 0.76 +1.2
3,245,040 + PS417_14845 0.76 -0.2
3,245,040 + +0.7
3,245,041 - PS417_14845 0.76 +0.1
3,245,074 - PS417_14845 0.83 -1.2
3,245,074 - PS417_14845 0.83 -0.4
3,245,134 - -0.4
3,245,236 - PS417_14850 0.40 -0.2
3,245,291 - PS417_14850 0.65 -0.9
3,245,465 + -0.6
3,245,465 + +1.5
3,245,490 + -0.3
3,245,733 - PS417_14855 0.24 +0.7
3,245,837 + PS417_14855 0.34 -0.3
3,245,934 - PS417_14855 0.43 +0.6
3,245,975 + -0.9
3,245,976 - PS417_14855 0.47 -0.8
3,246,090 + +0.7
3,246,090 + PS417_14855 0.57 +0.1
3,246,091 - PS417_14855 0.57 -0.3

Or see this region's nucleotide sequence