Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14300 and PS417_14305 are separated by 14 nucleotides PS417_14305 and PS417_14310 are separated by 42 nucleotides
PS417_14300: PS417_14300 - aspartate:proton symporter, at 3,129,584 to 3,131,203
_14300
PS417_14305: PS417_14305 - hydroxyproline-2-epimerase, at 3,131,218 to 3,132,144
_14305
PS417_14310: PS417_14310 - dihydrodipicolinate synthetase, at 3,132,187 to 3,133,134
_14310
Position (kb)
3131
3132
3133 Strain fitness (log2 ratio)
-1
0
1 at 3130.323 kb on - strand, within PS417_14300 at 3130.458 kb on - strand, within PS417_14300 at 3130.509 kb on - strand, within PS417_14300 at 3130.509 kb on - strand, within PS417_14300 at 3130.509 kb on - strand, within PS417_14300 at 3130.509 kb on - strand, within PS417_14300 at 3130.536 kb on - strand, within PS417_14300 at 3130.536 kb on - strand, within PS417_14300 at 3130.536 kb on - strand at 3130.899 kb on - strand, within PS417_14300 at 3131.058 kb on + strand at 3131.087 kb on + strand at 3131.390 kb on + strand, within PS417_14305 at 3131.407 kb on + strand at 3131.677 kb on + strand, within PS417_14305 at 3131.908 kb on + strand at 3132.034 kb on + strand, within PS417_14305 at 3132.082 kb on + strand at 3132.083 kb on - strand at 3132.160 kb on + strand at 3132.319 kb on + strand, within PS417_14310 at 3132.592 kb on + strand, within PS417_14310 at 3132.592 kb on + strand, within PS417_14310 at 3132.605 kb on - strand, within PS417_14310 at 3132.776 kb on + strand, within PS417_14310 at 3132.973 kb on + strand, within PS417_14310 at 3132.974 kb on - strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.977 kb on - strand, within PS417_14310 at 3132.977 kb on - strand, within PS417_14310 at 3133.013 kb on - strand, within PS417_14310
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 3,130,323 - PS417_14300 0.46 +0.1 3,130,458 - PS417_14300 0.54 +0.3 3,130,509 - PS417_14300 0.57 +0.2 3,130,509 - PS417_14300 0.57 +0.2 3,130,509 - PS417_14300 0.57 -0.0 3,130,509 - PS417_14300 0.57 +0.3 3,130,536 - PS417_14300 0.59 -0.3 3,130,536 - PS417_14300 0.59 -0.6 3,130,536 - +0.4 3,130,899 - PS417_14300 0.81 +0.3 3,131,058 + -0.0 3,131,087 + -0.3 3,131,390 + PS417_14305 0.19 -0.6 3,131,407 + +0.9 3,131,677 + PS417_14305 0.50 -1.2 3,131,908 + +1.4 3,132,034 + PS417_14305 0.88 -0.4 3,132,082 + -0.7 3,132,083 - -0.2 3,132,160 + -0.9 3,132,319 + PS417_14310 0.14 -0.0 3,132,592 + PS417_14310 0.43 -0.0 3,132,592 + PS417_14310 0.43 -1.4 3,132,605 - PS417_14310 0.44 -0.6 3,132,776 + PS417_14310 0.62 -0.8 3,132,973 + PS417_14310 0.83 -0.6 3,132,974 - PS417_14310 0.83 +0.1 3,132,976 + PS417_14310 0.83 -0.5 3,132,976 + PS417_14310 0.83 -0.1 3,132,976 + PS417_14310 0.83 -1.1 3,132,977 - PS417_14310 0.83 -1.0 3,132,977 - PS417_14310 0.83 -0.5 3,133,013 - PS417_14310 0.87 +0.1
Or see this region's nucleotide sequence