Strain Fitness in Pseudomonas simiae WCS417 around PS417_01400

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01395 and PS417_01400 are separated by 26 nucleotidesPS417_01400 and PS417_01405 are separated by 5 nucleotides PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781 _01395 PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326 _01400 PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699 _01405 Position (kb) 309 310 311Strain fitness (log2 ratio) -1 0 1 2at 308.884 kb on + strand, within PS417_01395at 308.921 kb on + strand, within PS417_01395at 308.921 kb on + strand, within PS417_01395at 308.922 kb on - strand, within PS417_01395at 308.923 kb on + strand, within PS417_01395at 308.924 kb on - strand, within PS417_01395at 309.356 kb on + strand, within PS417_01395at 309.357 kb on - strand, within PS417_01395at 309.392 kb on + strand, within PS417_01395at 309.393 kb on - strandat 309.393 kb on - strand, within PS417_01395at 309.393 kb on - strand, within PS417_01395at 309.519 kb on - strandat 309.519 kb on - strandat 309.578 kb on + strandat 309.579 kb on - strandat 309.635 kb on + strandat 309.635 kb on + strandat 309.636 kb on - strandat 309.636 kb on - strandat 309.758 kb on + strandat 309.793 kb on - strandat 309.845 kb on + strandat 309.846 kb on - strandat 309.938 kb on - strand, within PS417_01400at 310.148 kb on - strand, within PS417_01400at 310.403 kb on - strandat 310.599 kb on + strand, within PS417_01405at 310.602 kb on - strandat 310.714 kb on - strand, within PS417_01405

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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308,884 + PS417_01395 0.75 +0.6
308,921 + PS417_01395 0.76 +0.6
308,921 + PS417_01395 0.76 +0.2
308,922 - PS417_01395 0.76 +0.6
308,923 + PS417_01395 0.76 +0.3
308,924 - PS417_01395 0.76 +0.8
309,356 + PS417_01395 0.88 +0.7
309,357 - PS417_01395 0.88 +1.8
309,392 + PS417_01395 0.89 +0.9
309,393 - +0.8
309,393 - PS417_01395 0.89 +0.8
309,393 - PS417_01395 0.89 +0.8
309,519 - +1.0
309,519 - +0.8
309,578 + +2.0
309,579 - +0.8
309,635 + +0.2
309,635 + +0.5
309,636 - +0.8
309,636 - +0.7
309,758 + +0.7
309,793 - +0.4
309,845 + +0.6
309,846 - +0.7
309,938 - PS417_01400 0.25 +0.8
310,148 - PS417_01400 0.66 +0.3
310,403 - +0.4
310,599 + PS417_01405 0.20 +0.5
310,602 - +0.9
310,714 - PS417_01405 0.28 +1.1

Or see this region's nucleotide sequence