Strain Fitness in Pseudomonas simiae WCS417 around PS417_13165

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13155 and PS417_13160 are separated by 63 nucleotidesPS417_13160 and PS417_13165 are separated by 27 nucleotidesPS417_13165 and PS417_13170 are separated by 14 nucleotides PS417_13155: PS417_13155 - phosphatidylserine synthase, at 2,873,776 to 2,875,119 _13155 PS417_13160: PS417_13160 - iron transporter, at 2,875,183 to 2,876,001 _13160 PS417_13165: PS417_13165 - peroxidase, at 2,876,029 to 2,877,333 _13165 PS417_13170: PS417_13170 - multidrug DMT transporter permease, at 2,877,348 to 2,878,550 _13170 Position (kb) 2876 2877 2878Strain fitness (log2 ratio) -2 -1 0 1at 2875.117 kb on + strandat 2875.184 kb on + strandat 2875.185 kb on - strandat 2875.448 kb on + strand, within PS417_13160at 2875.531 kb on + strand, within PS417_13160at 2875.531 kb on + strand, within PS417_13160at 2875.532 kb on - strand, within PS417_13160at 2875.629 kb on + strand, within PS417_13160at 2875.648 kb on + strand, within PS417_13160at 2875.648 kb on + strandat 2875.653 kb on - strand, within PS417_13160at 2875.653 kb on - strand, within PS417_13160at 2875.775 kb on + strandat 2875.775 kb on + strand, within PS417_13160at 2875.775 kb on + strand, within PS417_13160at 2876.030 kb on + strandat 2876.031 kb on - strandat 2876.031 kb on - strandat 2876.147 kb on + strandat 2876.147 kb on + strandat 2876.384 kb on + strand, within PS417_13165at 2876.523 kb on - strand, within PS417_13165at 2877.095 kb on - strand, within PS417_13165at 2877.457 kb on + strandat 2877.637 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.667 kb on - strand, within PS417_13170at 2877.827 kb on - strand, within PS417_13170at 2877.971 kb on - strand, within PS417_13170at 2878.063 kb on + strand, within PS417_13170at 2878.199 kb on - strand, within PS417_13170

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,875,117 + +0.5
2,875,184 + -0.3
2,875,185 - -0.1
2,875,448 + PS417_13160 0.32 +0.3
2,875,531 + PS417_13160 0.42 -0.2
2,875,531 + PS417_13160 0.42 +0.1
2,875,532 - PS417_13160 0.43 -0.1
2,875,629 + PS417_13160 0.54 -0.1
2,875,648 + PS417_13160 0.57 +0.1
2,875,648 + +1.5
2,875,653 - PS417_13160 0.57 -0.2
2,875,653 - PS417_13160 0.57 -0.2
2,875,775 + +1.5
2,875,775 + PS417_13160 0.72 +0.2
2,875,775 + PS417_13160 0.72 -0.5
2,876,030 + -1.0
2,876,031 - -0.3
2,876,031 - -0.1
2,876,147 + -0.2
2,876,147 + +0.9
2,876,384 + PS417_13165 0.27 -1.8
2,876,523 - PS417_13165 0.38 -0.2
2,877,095 - PS417_13165 0.82 -0.9
2,877,457 + +1.0
2,877,637 + PS417_13170 0.24 -0.1
2,877,666 + PS417_13170 0.26 -0.6
2,877,666 + PS417_13170 0.26 -0.7
2,877,666 + PS417_13170 0.26 -1.0
2,877,666 + PS417_13170 0.26 +0.2
2,877,667 - PS417_13170 0.27 -0.1
2,877,827 - PS417_13170 0.40 -0.3
2,877,971 - PS417_13170 0.52 +0.4
2,878,063 + PS417_13170 0.59 +0.0
2,878,199 - PS417_13170 0.71 +0.7

Or see this region's nucleotide sequence