Strain Fitness in Pseudomonas simiae WCS417 around PS417_13095

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13090 and PS417_13095 overlap by 7 nucleotidesPS417_13095 and PS417_13100 are separated by 164 nucleotides PS417_13090: PS417_13090 - dienelactone hydrolase, at 2,859,503 to 2,860,540 _13090 PS417_13095: PS417_13095 - MFS transporter, at 2,860,534 to 2,861,709 _13095 PS417_13100: PS417_13100 - ABC transporter ATP-binding protein, at 2,861,874 to 2,863,460 _13100 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -1 0 1at 2859.659 kb on + strand, within PS417_13090at 2859.823 kb on + strand, within PS417_13090at 2859.823 kb on + strand, within PS417_13090at 2859.867 kb on - strand, within PS417_13090at 2859.867 kb on - strandat 2860.254 kb on - strand, within PS417_13090at 2860.688 kb on + strand, within PS417_13095at 2860.689 kb on - strand, within PS417_13095at 2860.689 kb on - strand, within PS417_13095at 2860.908 kb on + strand, within PS417_13095at 2860.909 kb on - strand, within PS417_13095at 2860.909 kb on - strand, within PS417_13095at 2860.929 kb on + strand, within PS417_13095at 2860.958 kb on + strand, within PS417_13095at 2860.988 kb on + strand, within PS417_13095at 2860.991 kb on + strand, within PS417_13095at 2861.001 kb on + strandat 2861.064 kb on + strand, within PS417_13095at 2861.187 kb on - strand, within PS417_13095at 2861.405 kb on - strand, within PS417_13095at 2861.534 kb on + strand, within PS417_13095at 2861.595 kb on - strandat 2861.595 kb on - strandat 2861.648 kb on + strandat 2861.780 kb on + strandat 2861.781 kb on - strandat 2861.783 kb on + strandat 2861.838 kb on - strandat 2861.902 kb on + strandat 2861.902 kb on + strandat 2861.903 kb on - strandat 2861.911 kb on + strandat 2861.912 kb on - strandat 2862.020 kb on - strandat 2862.302 kb on - strand, within PS417_13100

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,859,659 + PS417_13090 0.15 -0.2
2,859,823 + PS417_13090 0.31 +0.2
2,859,823 + PS417_13090 0.31 +0.2
2,859,867 - PS417_13090 0.35 +0.1
2,859,867 - -0.1
2,860,254 - PS417_13090 0.72 +0.0
2,860,688 + PS417_13095 0.13 -0.3
2,860,689 - PS417_13095 0.13 +0.3
2,860,689 - PS417_13095 0.13 +0.7
2,860,908 + PS417_13095 0.32 +0.1
2,860,909 - PS417_13095 0.32 +0.1
2,860,909 - PS417_13095 0.32 +0.5
2,860,929 + PS417_13095 0.34 +0.2
2,860,958 + PS417_13095 0.36 +1.3
2,860,988 + PS417_13095 0.39 +0.3
2,860,991 + PS417_13095 0.39 +0.9
2,861,001 + +0.2
2,861,064 + PS417_13095 0.45 +0.1
2,861,187 - PS417_13095 0.56 +1.2
2,861,405 - PS417_13095 0.74 -0.0
2,861,534 + PS417_13095 0.85 +0.3
2,861,595 - -0.5
2,861,595 - +0.6
2,861,648 + -0.2
2,861,780 + +0.5
2,861,781 - +1.1
2,861,783 + -0.0
2,861,838 - -0.1
2,861,902 + +0.7
2,861,902 + -0.2
2,861,903 - +0.8
2,861,911 + +0.3
2,861,912 - -0.3
2,862,020 - -0.3
2,862,302 - PS417_13100 0.27 -0.2

Or see this region's nucleotide sequence