Strain Fitness in Pseudomonas simiae WCS417 around PS417_10815

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10805 and PS417_10810 are separated by 157 nucleotidesPS417_10810 and PS417_10815 are separated by 298 nucleotidesPS417_10815 and PS417_10820 overlap by 4 nucleotides PS417_10805: PS417_10805 - chemotaxis protein CheY, at 2,308,680 to 2,310,905 _10805 PS417_10810: PS417_10810 - hypothetical protein, at 2,311,063 to 2,311,332 _10810 PS417_10815: PS417_10815 - TetR family transcriptional regulator, at 2,311,631 to 2,312,302 _10815 PS417_10820: PS417_10820 - N-methylproline demethylase, at 2,312,299 to 2,314,335 _10820 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1at 2310.926 kb on + strandat 2310.947 kb on + strandat 2311.005 kb on + strandat 2311.005 kb on + strandat 2311.107 kb on + strand, within PS417_10810at 2311.107 kb on + strandat 2311.108 kb on - strand, within PS417_10810at 2311.259 kb on + strand, within PS417_10810at 2311.340 kb on - strandat 2311.457 kb on - strandat 2311.550 kb on + strandat 2311.550 kb on + strandat 2311.560 kb on + strandat 2311.560 kb on + strandat 2311.561 kb on - strandat 2311.592 kb on + strandat 2311.593 kb on - strandat 2311.904 kb on - strand, within PS417_10815at 2312.120 kb on + strand, within PS417_10815at 2312.120 kb on + strand, within PS417_10815at 2312.121 kb on - strand, within PS417_10815at 2312.140 kb on + strand, within PS417_10815at 2312.331 kb on - strandat 2312.490 kb on - strandat 2312.490 kb on - strandat 2313.098 kb on - strand, within PS417_10820at 2313.246 kb on + strand, within PS417_10820at 2313.251 kb on + strand, within PS417_10820at 2313.269 kb on + strand, within PS417_10820at 2313.269 kb on + strand, within PS417_10820

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,310,926 + -0.0
2,310,947 + -2.2
2,311,005 + +0.1
2,311,005 + -0.4
2,311,107 + PS417_10810 0.16 -0.4
2,311,107 + -0.0
2,311,108 - PS417_10810 0.17 +0.1
2,311,259 + PS417_10810 0.73 +0.6
2,311,340 - +0.1
2,311,457 - +0.2
2,311,550 + +0.1
2,311,550 + -0.9
2,311,560 + -0.3
2,311,560 + +0.8
2,311,561 - +0.5
2,311,592 + +0.1
2,311,593 - -0.1
2,311,904 - PS417_10815 0.41 -0.4
2,312,120 + PS417_10815 0.73 -0.6
2,312,120 + PS417_10815 0.73 -1.0
2,312,121 - PS417_10815 0.73 -0.4
2,312,140 + PS417_10815 0.76 -1.4
2,312,331 - +0.1
2,312,490 - +1.1
2,312,490 - -0.1
2,313,098 - PS417_10820 0.39 -0.2
2,313,246 + PS417_10820 0.46 +0.4
2,313,251 + PS417_10820 0.47 -1.7
2,313,269 + PS417_10820 0.48 -0.7
2,313,269 + PS417_10820 0.48 +0.1

Or see this region's nucleotide sequence