Strain Fitness in Pseudomonas simiae WCS417 around PS417_09020

Experiment: Scopoletin 2 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09015 and PS417_09020 are separated by 30 nucleotidesPS417_09020 and PS417_09025 are separated by 97 nucleotidesPS417_09025 and PS417_09030 overlap by 4 nucleotides PS417_09015: PS417_09015 - AMP-binding protein, at 1,962,998 to 1,964,647 _09015 PS417_09020: PS417_09020 - esterase, at 1,964,678 to 1,965,121 _09020 PS417_09025: PS417_09025 - alpha/beta hydrolase, at 1,965,219 to 1,966,022 _09025 PS417_09030: PS417_09030 - alpha/beta hydrolase, at 1,966,019 to 1,966,873 _09030 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -1 0 1 2at 1964.000 kb on + strand, within PS417_09015at 1964.000 kb on + strand, within PS417_09015at 1964.001 kb on - strand, within PS417_09015at 1964.154 kb on - strand, within PS417_09015at 1964.294 kb on + strand, within PS417_09015at 1964.458 kb on - strand, within PS417_09015at 1964.588 kb on + strandat 1964.588 kb on + strandat 1964.828 kb on + strand, within PS417_09020at 1964.891 kb on + strand, within PS417_09020at 1964.899 kb on + strand, within PS417_09020at 1964.918 kb on + strand, within PS417_09020at 1965.153 kb on + strandat 1965.153 kb on + strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.271 kb on - strandat 1965.305 kb on + strand, within PS417_09025at 1965.305 kb on + strand, within PS417_09025at 1965.306 kb on - strand, within PS417_09025at 1965.360 kb on - strand, within PS417_09025at 1965.486 kb on + strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025at 1965.700 kb on - strand, within PS417_09025at 1965.700 kb on - strand, within PS417_09025at 1965.717 kb on + strand, within PS417_09025at 1965.718 kb on - strand, within PS417_09025at 1965.775 kb on - strand, within PS417_09025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
remove
1,964,000 + PS417_09015 0.61 +0.6
1,964,000 + PS417_09015 0.61 -0.9
1,964,001 - PS417_09015 0.61 -0.2
1,964,154 - PS417_09015 0.70 -0.0
1,964,294 + PS417_09015 0.79 -0.3
1,964,458 - PS417_09015 0.88 -0.1
1,964,588 + +0.0
1,964,588 + -0.5
1,964,828 + PS417_09020 0.34 +0.2
1,964,891 + PS417_09020 0.48 -0.5
1,964,899 + PS417_09020 0.50 +1.8
1,964,918 + PS417_09020 0.54 +0.1
1,965,153 + +0.5
1,965,153 + -0.2
1,965,154 - -0.3
1,965,154 - +0.0
1,965,154 - +0.4
1,965,154 - -0.4
1,965,271 - +0.7
1,965,305 + PS417_09025 0.11 -0.2
1,965,305 + PS417_09025 0.11 -0.3
1,965,306 - PS417_09025 0.11 -0.4
1,965,360 - PS417_09025 0.18 +0.0
1,965,486 + PS417_09025 0.33 -0.4
1,965,646 - PS417_09025 0.53 +0.2
1,965,646 - PS417_09025 0.53 -0.1
1,965,700 - PS417_09025 0.60 +0.3
1,965,700 - PS417_09025 0.60 -0.5
1,965,717 + PS417_09025 0.62 +0.8
1,965,718 - PS417_09025 0.62 +0.0
1,965,775 - PS417_09025 0.69 -0.6

Or see this region's nucleotide sequence