Experiment: Scopoletin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26270 and PS417_26275 are separated by 207 nucleotides PS417_26275 and PS417_26280 are separated by 73 nucleotides
PS417_26270: PS417_26270 - AraC family transcriptional regulator, at 5,677,248 to 5,678,192
_26270
PS417_26275: PS417_26275 - glycine/betaine ABC transporter substrate-binding protein, at 5,678,400 to 5,679,344
_26275
PS417_26280: PS417_26280 - NADPH:quinone reductase, at 5,679,418 to 5,680,305
_26280
Position (kb)
5678
5679
5680 Strain fitness (log2 ratio)
-2
-1
0
1 at 5677.417 kb on + strand, within PS417_26270 at 5677.417 kb on + strand, within PS417_26270 at 5678.139 kb on - strand at 5678.177 kb on - strand at 5678.231 kb on + strand at 5678.317 kb on + strand at 5678.318 kb on - strand at 5678.318 kb on - strand at 5678.322 kb on - strand at 5678.326 kb on + strand at 5678.326 kb on + strand at 5678.464 kb on + strand at 5678.527 kb on + strand, within PS417_26275 at 5678.769 kb on + strand, within PS417_26275 at 5678.769 kb on + strand, within PS417_26275 at 5678.770 kb on - strand, within PS417_26275 at 5678.770 kb on - strand, within PS417_26275 at 5679.342 kb on + strand at 5679.343 kb on - strand at 5679.396 kb on + strand at 5679.397 kb on - strand at 5679.841 kb on + strand, within PS417_26280 at 5679.841 kb on + strand, within PS417_26280 at 5679.842 kb on - strand, within PS417_26280 at 5679.842 kb on - strand, within PS417_26280 at 5679.850 kb on - strand, within PS417_26280
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress remove 5,677,417 + PS417_26270 0.18 -2.2 5,677,417 + PS417_26270 0.18 -0.5 5,678,139 - +0.7 5,678,177 - -0.3 5,678,231 + +0.2 5,678,317 + -0.3 5,678,318 - +0.0 5,678,318 - -0.1 5,678,322 - +1.1 5,678,326 + -0.8 5,678,326 + -0.2 5,678,464 + +0.4 5,678,527 + PS417_26275 0.13 -1.2 5,678,769 + PS417_26275 0.39 -0.1 5,678,769 + PS417_26275 0.39 -1.3 5,678,770 - PS417_26275 0.39 -1.1 5,678,770 - PS417_26275 0.39 +0.2 5,679,342 + -0.8 5,679,343 - -0.7 5,679,396 + -0.5 5,679,397 - -0.2 5,679,841 + PS417_26280 0.48 +0.1 5,679,841 + PS417_26280 0.48 +1.4 5,679,842 - PS417_26280 0.48 -0.5 5,679,842 - PS417_26280 0.48 +0.0 5,679,850 - PS417_26280 0.49 +0.3
Or see this region's nucleotide sequence