Experiment: Scopoletin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18910 and PS417_18915 overlap by 4 nucleotides PS417_18915 and PS417_18920 are separated by 9 nucleotides PS417_18920 and PS417_18925 are separated by 54 nucleotides
PS417_18910: PS417_18910 - acetylornithine deacetylase, at 4,095,905 to 4,097,062
_18910
PS417_18915: PS417_18915 - hypothetical protein, at 4,097,059 to 4,097,733
_18915
PS417_18920: PS417_18920 - hypothetical protein, at 4,097,743 to 4,098,474
_18920
PS417_18925: PS417_18925 - flagellar motor switch protein FliY, at 4,098,529 to 4,099,359
_18925
Position (kb)
4097
4098 Strain fitness (log2 ratio)
-1
0
1 at 4096.494 kb on + strand, within PS417_18910 at 4096.494 kb on + strand, within PS417_18910 at 4096.671 kb on + strand, within PS417_18910 at 4096.750 kb on - strand, within PS417_18910 at 4096.750 kb on - strand, within PS417_18910 at 4096.779 kb on + strand, within PS417_18910 at 4096.936 kb on - strand, within PS417_18910 at 4096.971 kb on + strand at 4096.972 kb on - strand at 4097.124 kb on - strand at 4097.385 kb on + strand, within PS417_18915 at 4097.386 kb on - strand, within PS417_18915 at 4097.821 kb on - strand, within PS417_18920 at 4097.821 kb on - strand, within PS417_18920 at 4098.127 kb on - strand, within PS417_18920 at 4098.310 kb on - strand, within PS417_18920 at 4098.530 kb on + strand at 4098.531 kb on - strand at 4098.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress remove 4,096,494 + PS417_18910 0.51 -0.1 4,096,494 + PS417_18910 0.51 +0.2 4,096,671 + PS417_18910 0.66 +0.9 4,096,750 - PS417_18910 0.73 -0.5 4,096,750 - PS417_18910 0.73 -0.8 4,096,779 + PS417_18910 0.75 -0.8 4,096,936 - PS417_18910 0.89 -0.3 4,096,971 + -0.0 4,096,972 - -0.8 4,097,124 - +0.2 4,097,385 + PS417_18915 0.48 -1.4 4,097,386 - PS417_18915 0.48 -0.2 4,097,821 - PS417_18920 0.11 +0.7 4,097,821 - PS417_18920 0.11 +0.9 4,098,127 - PS417_18920 0.52 -0.0 4,098,310 - PS417_18920 0.77 +0.5 4,098,530 + -0.7 4,098,531 - -0.0 4,098,581 + +0.8
Or see this region's nucleotide sequence