Experiment: Scopoletin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26715 and PS417_26720 are separated by 140 nucleotides PS417_26720 and PS417_26725 are separated by 57 nucleotides PS417_26725 and PS417_26730 are separated by 34 nucleotides
PS417_26715: PS417_26715 - peptidase P60, at 5,773,939 to 5,774,577
_26715
PS417_26720: PS417_26720 - twitching motility protein PilT, at 5,774,718 to 5,775,752
_26720
PS417_26725: PS417_26725 - hypothetical protein, at 5,775,810 to 5,776,496
_26725
PS417_26730: PS417_26730 - pyrroline-5-carboxylate reductase, at 5,776,531 to 5,777,349
_26730
Position (kb) 5774
5775
5776 Strain fitness (log2 ratio) -2
-1
0
1 at 5773.812 kb on + strand at 5773.902 kb on + strand at 5773.924 kb on + strand at 5773.976 kb on + strand at 5773.979 kb on + strand at 5774.242 kb on - strand, within PS417_26715 at 5774.242 kb on - strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.426 kb on - strand, within PS417_26715 at 5774.516 kb on - strand at 5774.553 kb on + strand at 5774.700 kb on + strand at 5774.701 kb on - strand at 5774.701 kb on - strand at 5774.710 kb on + strand at 5774.711 kb on - strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5775.261 kb on - strand, within PS417_26720 at 5775.411 kb on + strand, within PS417_26720 at 5775.411 kb on + strand, within PS417_26720 at 5775.412 kb on - strand, within PS417_26720 at 5775.412 kb on - strand, within PS417_26720 at 5775.461 kb on + strand, within PS417_26720 at 5775.603 kb on + strand, within PS417_26720 at 5775.603 kb on + strand, within PS417_26720 at 5775.604 kb on - strand, within PS417_26720 at 5775.604 kb on - strand, within PS417_26720 at 5775.736 kb on - strand at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.982 kb on - strand, within PS417_26725 at 5776.015 kb on + strand, within PS417_26725 at 5776.545 kb on + strand at 5776.733 kb on + strand, within PS417_26730
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress remove 5,773,812 + -0.3 5,773,902 + -0.2 5,773,924 + +0.2 5,773,976 + +0.7 5,773,979 + +0.2 5,774,242 - PS417_26715 0.47 -1.7 5,774,242 - PS417_26715 0.47 -0.0 5,774,272 + PS417_26715 0.52 +0.8 5,774,272 + PS417_26715 0.52 +0.3 5,774,272 + PS417_26715 0.52 -0.5 5,774,426 - PS417_26715 0.76 +0.2 5,774,516 - -1.4 5,774,553 + -0.2 5,774,700 + -0.2 5,774,701 - -0.1 5,774,701 - +0.1 5,774,710 + +0.0 5,774,711 - +0.2 5,774,721 + -0.2 5,774,721 + -0.0 5,774,721 + -0.3 5,774,721 + -0.9 5,774,721 + -0.1 5,774,722 - -0.3 5,774,722 - +0.3 5,774,722 - -0.2 5,774,722 - +0.5 5,774,722 - -0.1 5,774,722 - -0.2 5,774,722 - -1.0 5,774,722 - -0.4 5,774,722 - +0.9 5,775,261 - PS417_26720 0.52 +0.3 5,775,411 + PS417_26720 0.67 -0.6 5,775,411 + PS417_26720 0.67 +1.4 5,775,412 - PS417_26720 0.67 +0.2 5,775,412 - PS417_26720 0.67 +1.6 5,775,461 + PS417_26720 0.72 +0.6 5,775,603 + PS417_26720 0.86 +0.2 5,775,603 + PS417_26720 0.86 +0.9 5,775,604 - PS417_26720 0.86 -0.6 5,775,604 - PS417_26720 0.86 -0.2 5,775,736 - -1.9 5,775,949 - PS417_26725 0.20 +0.7 5,775,949 - PS417_26725 0.20 -2.4 5,775,949 - PS417_26725 0.20 -0.1 5,775,949 - PS417_26725 0.20 -0.3 5,775,981 + PS417_26725 0.25 -0.2 5,775,981 + PS417_26725 0.25 -0.9 5,775,981 + PS417_26725 0.25 -0.4 5,775,982 - PS417_26725 0.25 -0.1 5,776,015 + PS417_26725 0.30 +0.5 5,776,545 + +0.7 5,776,733 + PS417_26730 0.25 -0.5
Or see this region's nucleotide sequence