Strain Fitness in Pseudomonas simiae WCS417 around PS417_22660

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22650 and PS417_22655 are separated by 101 nucleotidesPS417_22655 and PS417_22660 are separated by 124 nucleotidesPS417_22660 and PS417_22665 are separated by 45 nucleotidesPS417_22665 and PS417_22670 are separated by 327 nucleotides PS417_22650: PS417_22650 - MFS transporter, at 4,905,809 to 4,907,128 _22650 PS417_22655: PS417_22655 - Asp/Glu/hydantoin racemase, at 4,907,230 to 4,907,862 _22655 PS417_22660: PS417_22660 - hypothetical protein, at 4,907,987 to 4,908,232 _22660 PS417_22665: PS417_22665 - antibiotic biosynthesis monooxygenase, at 4,908,278 to 4,908,619 _22665 PS417_22670: PS417_22670 - AraC family transcriptional regulator, at 4,908,947 to 4,909,876 _22670 Position (kb) 4907 4908 4909Strain fitness (log2 ratio) -1 0 1 2at 4906.992 kb on - strand, within PS417_22650at 4907.036 kb on + strandat 4907.042 kb on + strandat 4907.043 kb on - strandat 4907.078 kb on + strandat 4907.078 kb on + strandat 4907.078 kb on + strandat 4907.079 kb on - strandat 4907.126 kb on + strandat 4907.393 kb on - strand, within PS417_22655at 4907.696 kb on + strandat 4907.837 kb on - strandat 4907.869 kb on + strandat 4907.875 kb on - strandat 4908.169 kb on - strand, within PS417_22660at 4908.169 kb on - strand, within PS417_22660at 4908.189 kb on - strand, within PS417_22660at 4908.269 kb on + strandat 4908.411 kb on + strandat 4908.593 kb on - strandat 4908.593 kb on - strandat 4908.732 kb on + strandat 4908.732 kb on + strandat 4908.760 kb on + strandat 4908.761 kb on - strandat 4908.783 kb on - strandat 4908.885 kb on - strandat 4908.927 kb on + strandat 4908.934 kb on + strandat 4908.964 kb on + strandat 4908.964 kb on + strandat 4908.964 kb on + strandat 4908.964 kb on + strandat 4908.965 kb on - strandat 4908.965 kb on - strandat 4909.052 kb on + strand, within PS417_22670at 4909.053 kb on - strand, within PS417_22670at 4909.053 kb on - strand, within PS417_22670at 4909.058 kb on - strand, within PS417_22670at 4909.205 kb on + strand, within PS417_22670

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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4,906,992 - PS417_22650 0.90 +1.0
4,907,036 + -0.2
4,907,042 + +0.3
4,907,043 - -0.5
4,907,078 + +0.3
4,907,078 + -0.3
4,907,078 + +0.5
4,907,079 - +0.0
4,907,126 + -0.3
4,907,393 - PS417_22655 0.26 +0.7
4,907,696 + +1.1
4,907,837 - +0.3
4,907,869 + -0.1
4,907,875 - +1.8
4,908,169 - PS417_22660 0.74 +0.0
4,908,169 - PS417_22660 0.74 +0.0
4,908,189 - PS417_22660 0.82 +2.0
4,908,269 + +0.6
4,908,411 + -0.2
4,908,593 - -0.0
4,908,593 - +1.2
4,908,732 + +0.3
4,908,732 + +1.2
4,908,760 + -0.5
4,908,761 - -0.8
4,908,783 - -0.1
4,908,885 - -0.9
4,908,927 + +0.1
4,908,934 + -1.2
4,908,964 + -0.2
4,908,964 + -1.0
4,908,964 + -1.6
4,908,964 + -0.2
4,908,965 - -0.1
4,908,965 - +0.6
4,909,052 + PS417_22670 0.11 +0.1
4,909,053 - PS417_22670 0.11 -0.2
4,909,053 - PS417_22670 0.11 -0.1
4,909,058 - PS417_22670 0.12 -0.8
4,909,205 + PS417_22670 0.28 +0.0

Or see this region's nucleotide sequence