Experiment: Scopoletin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17880 and PS417_17885 are separated by 13 nucleotides PS417_17885 and PS417_17890 overlap by 8 nucleotides PS417_17890 and PS417_17895 overlap by 14 nucleotides PS417_17895 and PS417_17900 are separated by 5 nucleotides
PS417_17880: PS417_17880 - hypothetical protein, at 3,903,269 to 3,903,634
_17880
PS417_17885: PS417_17885 - moaF, at 3,903,648 to 3,904,469
_17885
PS417_17890: PS417_17890 - 3-oxoacyl-ACP reductase, at 3,904,462 to 3,905,262
_17890
PS417_17895: PS417_17895 - 3-ketoacyl-ACP reductase, at 3,905,249 to 3,906,007
_17895
PS417_17900: PS417_17900 - transcriptional regulator, at 3,906,013 to 3,906,954
_17900
Position (kb)
3904
3905
3906 Strain fitness (log2 ratio)
-1
0
1 at 3903.537 kb on - strand, within PS417_17880 at 3903.617 kb on + strand at 3903.617 kb on + strand at 3903.618 kb on - strand at 3903.630 kb on + strand at 3903.631 kb on - strand at 3903.632 kb on + strand at 3903.882 kb on + strand, within PS417_17885 at 3904.203 kb on + strand, within PS417_17885 at 3904.204 kb on - strand, within PS417_17885 at 3904.287 kb on + strand, within PS417_17885 at 3904.287 kb on + strand, within PS417_17885 at 3904.298 kb on - strand, within PS417_17885 at 3904.455 kb on + strand at 3904.532 kb on - strand at 3904.548 kb on - strand, within PS417_17890 at 3904.548 kb on - strand, within PS417_17890 at 3904.548 kb on - strand, within PS417_17890 at 3904.970 kb on + strand, within PS417_17890 at 3905.072 kb on - strand, within PS417_17890 at 3906.014 kb on + strand at 3906.123 kb on - strand, within PS417_17900 at 3906.123 kb on - strand, within PS417_17900
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress remove 3,903,537 - PS417_17880 0.73 +0.1 3,903,617 + +0.1 3,903,617 + -0.4 3,903,618 - -1.5 3,903,630 + +0.0 3,903,631 - -0.1 3,903,632 + -1.7 3,903,882 + PS417_17885 0.28 +0.6 3,904,203 + PS417_17885 0.68 +0.8 3,904,204 - PS417_17885 0.68 -0.8 3,904,287 + PS417_17885 0.78 -0.2 3,904,287 + PS417_17885 0.78 +0.2 3,904,298 - PS417_17885 0.79 +0.2 3,904,455 + +0.3 3,904,532 - -0.1 3,904,548 - PS417_17890 0.11 +0.7 3,904,548 - PS417_17890 0.11 +0.1 3,904,548 - PS417_17890 0.11 -0.0 3,904,970 + PS417_17890 0.63 +0.7 3,905,072 - PS417_17890 0.76 +1.0 3,906,014 + +0.3 3,906,123 - PS417_17900 0.12 -0.1 3,906,123 - PS417_17900 0.12 -0.1
Or see this region's nucleotide sequence