Strain Fitness in Pseudomonas simiae WCS417 around PS417_14285

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14280 and PS417_14285 are separated by 204 nucleotidesPS417_14285 and PS417_14290 are separated by 148 nucleotides PS417_14280: PS417_14280 - hypothetical protein, at 3,124,304 to 3,125,230 _14280 PS417_14285: PS417_14285 - hypothetical protein, at 3,125,435 to 3,126,211 _14285 PS417_14290: PS417_14290 - trehalose synthase, at 3,126,360 to 3,128,423 _14290 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -1 0 1 2at 3124.553 kb on + strand, within PS417_14280at 3124.762 kb on - strand, within PS417_14280at 3124.920 kb on + strand, within PS417_14280at 3124.921 kb on - strand, within PS417_14280at 3125.103 kb on - strand, within PS417_14280at 3125.300 kb on - strandat 3125.300 kb on - strandat 3125.344 kb on + strandat 3125.422 kb on + strandat 3125.422 kb on + strandat 3125.504 kb on - strandat 3125.516 kb on + strand, within PS417_14285at 3125.517 kb on - strand, within PS417_14285at 3125.782 kb on - strand, within PS417_14285at 3125.917 kb on - strand, within PS417_14285at 3125.919 kb on + strand, within PS417_14285at 3125.919 kb on + strand, within PS417_14285at 3125.919 kb on + strand, within PS417_14285at 3125.920 kb on - strand, within PS417_14285at 3125.984 kb on - strand, within PS417_14285at 3126.086 kb on + strand, within PS417_14285at 3126.149 kb on + strandat 3126.177 kb on - strandat 3126.236 kb on + strandat 3126.251 kb on - strandat 3126.291 kb on + strandat 3126.404 kb on - strandat 3126.422 kb on + strandat 3126.650 kb on - strand, within PS417_14290at 3126.752 kb on + strand, within PS417_14290at 3126.753 kb on - strand, within PS417_14290at 3126.929 kb on - strand, within PS417_14290at 3126.929 kb on - strand, within PS417_14290at 3126.929 kb on - strand, within PS417_14290at 3126.929 kb on - strand, within PS417_14290at 3127.099 kb on + strand, within PS417_14290at 3127.100 kb on - strand, within PS417_14290at 3127.100 kb on - strand, within PS417_14290

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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3,124,553 + PS417_14280 0.27 +0.1
3,124,762 - PS417_14280 0.49 +0.9
3,124,920 + PS417_14280 0.66 -1.3
3,124,921 - PS417_14280 0.67 -0.6
3,125,103 - PS417_14280 0.86 -0.3
3,125,300 - -0.6
3,125,300 - -0.1
3,125,344 + -0.5
3,125,422 + -0.1
3,125,422 + -0.1
3,125,504 - -0.3
3,125,516 + PS417_14285 0.10 +0.0
3,125,517 - PS417_14285 0.11 -0.1
3,125,782 - PS417_14285 0.45 -0.2
3,125,917 - PS417_14285 0.62 +2.7
3,125,919 + PS417_14285 0.62 +1.2
3,125,919 + PS417_14285 0.62 -0.4
3,125,919 + PS417_14285 0.62 +0.7
3,125,920 - PS417_14285 0.62 +0.2
3,125,984 - PS417_14285 0.71 -0.3
3,126,086 + PS417_14285 0.84 -0.0
3,126,149 + -0.1
3,126,177 - -0.5
3,126,236 + -0.4
3,126,251 - -0.1
3,126,291 + -0.3
3,126,404 - +0.5
3,126,422 + +0.6
3,126,650 - PS417_14290 0.14 +1.5
3,126,752 + PS417_14290 0.19 -0.2
3,126,753 - PS417_14290 0.19 -0.6
3,126,929 - PS417_14290 0.28 -1.0
3,126,929 - PS417_14290 0.28 -0.0
3,126,929 - PS417_14290 0.28 +0.2
3,126,929 - PS417_14290 0.28 +0.4
3,127,099 + PS417_14290 0.36 +0.2
3,127,100 - PS417_14290 0.36 -0.1
3,127,100 - PS417_14290 0.36 +0.0

Or see this region's nucleotide sequence