Strain Fitness in Pseudomonas simiae WCS417 around PS417_13335

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13330 and PS417_13335 are separated by 314 nucleotidesPS417_13335 and PS417_13340 are separated by 20 nucleotides PS417_13330: PS417_13330 - autotransporter, at 2,929,530 to 2,931,185 _13330 PS417_13335: PS417_13335 - aldo/keto reductase, at 2,931,500 to 2,932,486 _13335 PS417_13340: PS417_13340 - hypothetical protein, at 2,932,507 to 2,933,664 _13340 Position (kb) 2931 2932 2933Strain fitness (log2 ratio) -1 0 1at 2930.508 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.602 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2931.076 kb on - strandat 2931.100 kb on + strandat 2931.849 kb on - strand, within PS417_13335at 2931.883 kb on + strand, within PS417_13335at 2932.452 kb on - strandat 2932.664 kb on - strand, within PS417_13340at 2932.664 kb on - strand, within PS417_13340at 2932.686 kb on - strand, within PS417_13340at 2932.932 kb on + strand, within PS417_13340at 2933.050 kb on + strand, within PS417_13340at 2933.163 kb on + strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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2,930,508 + PS417_13330 0.59 -1.0
2,930,548 + PS417_13330 0.61 +0.4
2,930,548 + PS417_13330 0.61 -0.5
2,930,548 + PS417_13330 0.61 -1.1
2,930,548 + PS417_13330 0.61 +0.8
2,930,549 - PS417_13330 0.62 -0.3
2,930,549 - PS417_13330 0.62 -0.8
2,930,549 - PS417_13330 0.62 +0.2
2,930,549 - PS417_13330 0.62 -0.2
2,930,549 - PS417_13330 0.62 +0.3
2,930,602 + PS417_13330 0.65 -1.3
2,930,944 + PS417_13330 0.85 -0.1
2,930,944 + PS417_13330 0.85 +0.5
2,930,944 + PS417_13330 0.85 -0.5
2,930,944 + PS417_13330 0.85 +0.4
2,931,076 - +0.2
2,931,100 + -0.3
2,931,849 - PS417_13335 0.35 -0.2
2,931,883 + PS417_13335 0.39 +0.8
2,932,452 - -0.1
2,932,664 - PS417_13340 0.14 +0.9
2,932,664 - PS417_13340 0.14 +0.0
2,932,686 - PS417_13340 0.15 +1.1
2,932,932 + PS417_13340 0.37 +0.0
2,933,050 + PS417_13340 0.47 +0.2
2,933,163 + PS417_13340 0.57 +0.0
2,933,164 - PS417_13340 0.57 +0.7
2,933,164 - PS417_13340 0.57 -0.3
2,933,167 + PS417_13340 0.57 +1.3
2,933,167 + PS417_13340 0.57 +0.2
2,933,168 - PS417_13340 0.57 -0.6
2,933,168 - PS417_13340 0.57 -0.2
2,933,168 - PS417_13340 0.57 -0.1
2,933,311 + -0.4

Or see this region's nucleotide sequence