Strain Fitness in Pseudomonas simiae WCS417 around PS417_22915

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22905 and PS417_22910 are separated by 45 nucleotidesPS417_22910 and PS417_22915 are separated by 2 nucleotidesPS417_22915 and PS417_22920 are separated by 5 nucleotidesPS417_22920 and PS417_22925 are separated by 250 nucleotides PS417_22905: PS417_22905 - 50S ribosomal protein L19, at 4,963,690 to 4,964,040 _22905 PS417_22910: PS417_22910 - tRNA (guanine-N1)-methyltransferase, at 4,964,086 to 4,964,838 _22910 PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377 _22915 PS417_22920: PS417_22920 - 30S ribosomal protein S16, at 4,965,383 to 4,965,634 _22920 PS417_22925: PS417_22925 - RNA-binding protein, at 4,965,885 to 4,967,261 _22925 Position (kb) 4964 4965 4966Strain fitness (log2 ratio) -2 -1 0 1at 4964.057 kb on - strandat 4964.057 kb on - strandat 4964.071 kb on - strandat 4964.843 kb on - strandat 4965.778 kb on - strandat 4965.780 kb on - strandat 4965.881 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.918 kb on - strandat 4965.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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4,964,057 - -0.0
4,964,057 - +0.5
4,964,071 - -0.0
4,964,843 - -0.7
4,965,778 - +0.7
4,965,780 - +0.4
4,965,881 + +0.1
4,965,917 + +1.1
4,965,917 + -1.9
4,965,917 + +0.1
4,965,917 + -0.1
4,965,918 - -0.0
4,965,918 - -0.1

Or see this region's nucleotide sequence