Experiment: 80% Methanol 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15485 and PS417_15490 overlap by 4 nucleotides PS417_15490 and PS417_15495 overlap by 4 nucleotides PS417_15495 and PS417_15500 are separated by 128 nucleotides
PS417_15485: PS417_15485 - amino acid ABC transporter permease, at 3,392,752 to 3,393,420
_15485
PS417_15490: PS417_15490 - glutamine ABC transporter ATP-binding protein, at 3,393,417 to 3,394,169
_15490
PS417_15495: PS417_15495 - FAD-dependent oxidoreductase, at 3,394,166 to 3,395,434
_15495
PS417_15500: PS417_15500 - membrane protein, at 3,395,563 to 3,396,330
_15500
Position (kb)
3394
3395
3396 Strain fitness (log2 ratio)
-1
0
1
2 at 3393.344 kb on - strand, within PS417_15485 at 3393.371 kb on - strand at 3393.574 kb on - strand, within PS417_15490 at 3393.727 kb on - strand, within PS417_15490 at 3394.053 kb on + strand, within PS417_15490 at 3394.054 kb on - strand, within PS417_15490 at 3394.054 kb on - strand, within PS417_15490 at 3394.054 kb on - strand, within PS417_15490 at 3395.226 kb on + strand, within PS417_15495 at 3395.269 kb on + strand, within PS417_15495 at 3395.378 kb on + strand at 3395.404 kb on + strand at 3395.450 kb on - strand at 3395.539 kb on + strand at 3395.540 kb on - strand at 3395.617 kb on + strand at 3395.632 kb on + strand at 3395.632 kb on + strand at 3395.718 kb on + strand, within PS417_15500 at 3395.774 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.855 kb on - strand at 3395.855 kb on - strand, within PS417_15500 at 3395.855 kb on - strand, within PS417_15500 at 3395.855 kb on - strand, within PS417_15500 at 3396.104 kb on - strand, within PS417_15500 at 3396.104 kb on - strand, within PS417_15500 at 3396.106 kb on - strand, within PS417_15500 at 3396.106 kb on - strand, within PS417_15500 at 3396.183 kb on - strand, within PS417_15500 at 3396.183 kb on - strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.227 kb on - strand, within PS417_15500 at 3396.342 kb on + strand at 3396.427 kb on + strand at 3396.428 kb on - strand at 3396.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 1 mM; solid stress remove 3,393,344 - PS417_15485 0.88 -0.5 3,393,371 - -0.8 3,393,574 - PS417_15490 0.21 +0.2 3,393,727 - PS417_15490 0.41 -0.1 3,394,053 + PS417_15490 0.84 +1.4 3,394,054 - PS417_15490 0.85 -0.5 3,394,054 - PS417_15490 0.85 +1.9 3,394,054 - PS417_15490 0.85 -0.1 3,395,226 + PS417_15495 0.84 -0.4 3,395,269 + PS417_15495 0.87 -0.8 3,395,378 + -0.1 3,395,404 + -0.4 3,395,450 - -1.2 3,395,539 + -0.5 3,395,540 - +0.7 3,395,617 + -0.0 3,395,632 + -0.7 3,395,632 + +0.3 3,395,718 + PS417_15500 0.20 -0.2 3,395,774 + PS417_15500 0.27 -0.4 3,395,854 + PS417_15500 0.38 +0.3 3,395,854 + PS417_15500 0.38 +0.1 3,395,854 + PS417_15500 0.38 -1.6 3,395,855 - +0.1 3,395,855 - PS417_15500 0.38 -0.4 3,395,855 - PS417_15500 0.38 -0.1 3,395,855 - PS417_15500 0.38 -0.6 3,396,104 - PS417_15500 0.70 -0.7 3,396,104 - PS417_15500 0.70 -0.4 3,396,106 - PS417_15500 0.71 -1.1 3,396,106 - PS417_15500 0.71 -0.0 3,396,183 - PS417_15500 0.81 +0.2 3,396,183 - PS417_15500 0.81 -0.2 3,396,226 + PS417_15500 0.86 -1.4 3,396,226 + PS417_15500 0.86 +1.1 3,396,226 + PS417_15500 0.86 -0.7 3,396,227 - PS417_15500 0.86 +0.7 3,396,342 + +0.0 3,396,427 + -0.4 3,396,428 - +0.2 3,396,428 - -0.4
Or see this region's nucleotide sequence