Strain Fitness in Pseudomonas simiae WCS417 around PS417_14245

Experiment: 80% Methanol 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14235 and PS417_14240 are separated by 254 nucleotidesPS417_14240 and PS417_14245 are separated by 40 nucleotidesPS417_14245 and PS417_14250 overlap by 1 nucleotidesPS417_14250 and PS417_14255 are separated by 27 nucleotides PS417_14235: PS417_14235 - hypothetical protein, at 3,116,992 to 3,117,189 _14235 PS417_14240: PS417_14240 - isochorismatase, at 3,117,444 to 3,118,049 _14240 PS417_14245: PS417_14245 - hypothetical protein, at 3,118,090 to 3,118,680 _14245 PS417_14250: PS417_14250 - hypothetical protein, at 3,118,680 to 3,119,378 _14250 PS417_14255: PS417_14255 - phosphate import ATP-binding protein PstB, at 3,119,406 to 3,120,167 _14255 Position (kb) 3118 3119Strain fitness (log2 ratio) -3 -2 -1 0 1at 3117.126 kb on + strand, within PS417_14235at 3117.143 kb on - strand, within PS417_14235at 3117.207 kb on - strandat 3117.207 kb on - strandat 3117.227 kb on + strandat 3117.228 kb on - strandat 3117.243 kb on + strandat 3117.243 kb on + strandat 3117.244 kb on - strandat 3117.244 kb on - strandat 3117.268 kb on - strandat 3117.341 kb on + strandat 3117.344 kb on - strandat 3117.353 kb on + strandat 3117.393 kb on + strandat 3117.393 kb on + strandat 3117.394 kb on - strandat 3117.394 kb on - strandat 3117.913 kb on - strand, within PS417_14240at 3117.913 kb on - strand, within PS417_14240at 3117.913 kb on - strand, within PS417_14240at 3117.914 kb on + strand, within PS417_14240at 3117.914 kb on + strand, within PS417_14240at 3117.938 kb on + strandat 3118.047 kb on + strandat 3118.427 kb on + strand, within PS417_14245at 3118.427 kb on + strand, within PS417_14245at 3118.427 kb on + strand, within PS417_14245at 3118.428 kb on - strand, within PS417_14245at 3118.748 kb on + strandat 3118.748 kb on + strandat 3118.749 kb on - strandat 3118.795 kb on + strand, within PS417_14250at 3118.912 kb on + strand, within PS417_14250at 3118.980 kb on + strand, within PS417_14250at 3118.981 kb on - strand, within PS417_14250at 3118.981 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3119.032 kb on + strand, within PS417_14250at 3119.041 kb on + strand, within PS417_14250at 3119.042 kb on - strand, within PS417_14250at 3119.110 kb on + strand, within PS417_14250at 3119.146 kb on - strand, within PS417_14250at 3119.215 kb on + strand, within PS417_14250at 3119.215 kb on + strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.429 kb on - strandat 3119.596 kb on + strand, within PS417_14255at 3119.597 kb on - strand, within PS417_14255

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 1 mM; solid stress
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3,117,126 + PS417_14235 0.68 -0.2
3,117,143 - PS417_14235 0.76 +0.6
3,117,207 - -1.0
3,117,207 - +0.9
3,117,227 + +0.6
3,117,228 - +0.7
3,117,243 + -0.4
3,117,243 + -0.8
3,117,244 - +0.6
3,117,244 - -0.1
3,117,268 - -0.2
3,117,341 + -0.4
3,117,344 - +0.8
3,117,353 + -0.2
3,117,393 + -3.2
3,117,393 + +0.1
3,117,394 - -0.4
3,117,394 - -0.3
3,117,913 - PS417_14240 0.77 -0.2
3,117,913 - PS417_14240 0.77 +0.3
3,117,913 - PS417_14240 0.77 -0.5
3,117,914 + PS417_14240 0.78 +0.1
3,117,914 + PS417_14240 0.78 +0.9
3,117,938 + +0.2
3,118,047 + -0.5
3,118,427 + PS417_14245 0.57 -1.1
3,118,427 + PS417_14245 0.57 -0.4
3,118,427 + PS417_14245 0.57 +1.0
3,118,428 - PS417_14245 0.57 -0.8
3,118,748 + -0.2
3,118,748 + +0.2
3,118,749 - -0.6
3,118,795 + PS417_14250 0.16 +0.6
3,118,912 + PS417_14250 0.33 +0.7
3,118,980 + PS417_14250 0.43 +0.2
3,118,981 - PS417_14250 0.43 -0.0
3,118,981 - PS417_14250 0.43 +0.3
3,118,985 - PS417_14250 0.44 -0.0
3,118,985 - PS417_14250 0.44 -0.7
3,118,985 - PS417_14250 0.44 +0.1
3,119,032 + PS417_14250 0.50 -0.1
3,119,041 + PS417_14250 0.52 +0.7
3,119,042 - PS417_14250 0.52 -0.2
3,119,110 + PS417_14250 0.62 -0.7
3,119,146 - PS417_14250 0.67 -0.3
3,119,215 + PS417_14250 0.77 -0.9
3,119,215 + PS417_14250 0.77 +0.5
3,119,216 - PS417_14250 0.77 +0.3
3,119,216 - PS417_14250 0.77 +0.2
3,119,216 - PS417_14250 0.77 -0.3
3,119,429 - -0.2
3,119,596 + PS417_14255 0.25 -0.1
3,119,597 - PS417_14255 0.25 +0.6

Or see this region's nucleotide sequence