Strain Fitness in Pseudomonas simiae WCS417 around PS417_11755

Experiment: 80% Methanol 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11750 and PS417_11755 are separated by 192 nucleotidesPS417_11755 and PS417_11760 are separated by 49 nucleotides PS417_11750: PS417_11750 - TonB-dependent receptor, at 2,554,998 to 2,557,163 _11750 PS417_11755: PS417_11755 - diacetyl reductase, at 2,557,356 to 2,558,135 _11755 PS417_11760: PS417_11760 - Fis family transcriptional regulator, at 2,558,185 to 2,560,050 _11760 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -1 0 1 2at 2556.676 kb on + strand, within PS417_11750at 2556.676 kb on + strand, within PS417_11750at 2556.676 kb on + strand, within PS417_11750at 2556.677 kb on - strand, within PS417_11750at 2556.677 kb on - strandat 2556.704 kb on + strand, within PS417_11750at 2556.806 kb on - strand, within PS417_11750at 2556.854 kb on - strand, within PS417_11750at 2556.872 kb on - strand, within PS417_11750at 2557.206 kb on - strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.212 kb on - strandat 2557.212 kb on - strandat 2557.212 kb on - strandat 2557.321 kb on - strandat 2557.321 kb on - strandat 2557.696 kb on + strand, within PS417_11755at 2557.916 kb on - strand, within PS417_11755at 2557.929 kb on - strand, within PS417_11755at 2557.929 kb on - strandat 2557.998 kb on + strand, within PS417_11755at 2557.999 kb on - strand, within PS417_11755at 2558.891 kb on + strand, within PS417_11760

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 1 mM; solid stress
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2,556,676 + PS417_11750 0.77 +0.2
2,556,676 + PS417_11750 0.77 -0.5
2,556,676 + PS417_11750 0.77 -0.0
2,556,677 - PS417_11750 0.78 +0.9
2,556,677 - +1.0
2,556,704 + PS417_11750 0.79 +0.5
2,556,806 - PS417_11750 0.83 +0.6
2,556,854 - PS417_11750 0.86 +0.2
2,556,872 - PS417_11750 0.87 +0.6
2,557,206 - -0.1
2,557,211 + -0.2
2,557,211 + +0.2
2,557,211 + +1.2
2,557,211 + -0.8
2,557,212 - -0.4
2,557,212 - -0.0
2,557,212 - -0.5
2,557,321 - -0.4
2,557,321 - +0.4
2,557,696 + PS417_11755 0.44 -1.5
2,557,916 - PS417_11755 0.72 -0.7
2,557,929 - PS417_11755 0.73 -0.3
2,557,929 - +1.9
2,557,998 + PS417_11755 0.82 -1.1
2,557,999 - PS417_11755 0.82 -0.4
2,558,891 + PS417_11760 0.38 -0.5

Or see this region's nucleotide sequence