Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21375 and PS417_21380 overlap by 4 nucleotides PS417_21380 and PS417_21385 are separated by 64 nucleotides PS417_21385 and PS417_21390 are separated by 16 nucleotides
PS417_21375: PS417_21375 - ADP-ribosylglycohydrolase, at 4,643,889 to 4,644,890
_21375
PS417_21380: PS417_21380 - GntR family transcriptional regulator, at 4,644,887 to 4,645,606
_21380
PS417_21385: PS417_21385 - hypothetical protein, at 4,645,671 to 4,646,231
_21385
PS417_21390: PS417_21390 - hypothetical protein, at 4,646,248 to 4,646,853
_21390
Position (kb) 4644
4645
4646 Strain fitness (log2 ratio) -2
-1
0
1 at 4644.243 kb on - strand, within PS417_21375 at 4644.428 kb on + strand, within PS417_21375 at 4644.429 kb on - strand, within PS417_21375 at 4644.740 kb on + strand, within PS417_21375 at 4644.741 kb on - strand, within PS417_21375 at 4644.856 kb on + strand at 4644.951 kb on + strand at 4644.951 kb on + strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4645.091 kb on - strand, within PS417_21380 at 4645.098 kb on + strand, within PS417_21380 at 4645.420 kb on - strand, within PS417_21380 at 4645.603 kb on - strand at 4645.771 kb on + strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4646.020 kb on + strand, within PS417_21385 at 4646.021 kb on - strand, within PS417_21385 at 4646.095 kb on + strand at 4646.163 kb on + strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.232 kb on - strand at 4646.249 kb on + strand at 4646.249 kb on + strand at 4646.250 kb on - strand at 4646.358 kb on + strand, within PS417_21390 at 4646.367 kb on + strand, within PS417_21390 at 4646.368 kb on - strand, within PS417_21390 at 4646.378 kb on + strand, within PS417_21390 at 4646.507 kb on + strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 4,644,243 - PS417_21375 0.35 +0.5 4,644,428 + PS417_21375 0.54 +0.2 4,644,429 - PS417_21375 0.54 -0.3 4,644,740 + PS417_21375 0.85 +0.4 4,644,741 - PS417_21375 0.85 +0.4 4,644,856 + -0.1 4,644,951 + +0.3 4,644,951 + -0.2 4,644,952 - -0.4 4,644,952 - +0.3 4,644,952 - -0.3 4,644,978 + PS417_21380 0.13 +1.7 4,644,978 + PS417_21380 0.13 +0.1 4,644,978 + PS417_21380 0.13 +0.8 4,644,978 + PS417_21380 0.13 -0.1 4,644,979 - PS417_21380 0.13 +0.4 4,644,979 - PS417_21380 0.13 -0.3 4,644,979 - PS417_21380 0.13 +1.1 4,645,091 - PS417_21380 0.28 +0.0 4,645,098 + PS417_21380 0.29 +0.8 4,645,420 - PS417_21380 0.74 +0.6 4,645,603 - -0.4 4,645,771 + PS417_21385 0.18 +1.1 4,645,772 - PS417_21385 0.18 -0.4 4,645,772 - PS417_21385 0.18 -0.1 4,645,921 - PS417_21385 0.45 +0.1 4,645,921 - PS417_21385 0.45 -0.0 4,646,020 + PS417_21385 0.62 +0.1 4,646,021 - PS417_21385 0.62 +1.0 4,646,095 + +0.3 4,646,163 + PS417_21385 0.88 -0.1 4,646,164 - PS417_21385 0.88 -0.5 4,646,164 - PS417_21385 0.88 -0.1 4,646,232 - +0.7 4,646,249 + -0.6 4,646,249 + -0.4 4,646,250 - -0.2 4,646,358 + PS417_21390 0.18 -0.5 4,646,367 + PS417_21390 0.20 +0.9 4,646,368 - PS417_21390 0.20 +1.2 4,646,378 + PS417_21390 0.21 +1.1 4,646,507 + PS417_21390 0.43 -0.3 4,646,508 - PS417_21390 0.43 -0.3 4,646,508 - PS417_21390 0.43 +0.1 4,646,516 + PS417_21390 0.44 +0.2 4,646,516 + PS417_21390 0.44 -2.0
Or see this region's nucleotide sequence